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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1|204247364|204257869|-|5|circRNA|PLEKHA6|ENST00000272203.7|13,12,11,10,9 | circPLEKHA6(13,12,11,10,9) | PLEKHA6 | LGPGGQAPCLPQWGWPCLPAARVEGARQLRAAGCHRLDPKPLPAASLL | VEGARQLR | No | Alternative | Alternative | 8 | 1 | CTG | TGA | TransCirc | No |
chr1|204454668|204469886|-|11|circRNA|PIK3C2B|ENST00000367187.7|13,12,11,10,9,8,7,6,5,4,3 | circPIK3C2B(13,12,11,10,9,8,7,6,5,4,3) | PIK3C2B | MKISTSPAPSAMAARSCAAPCRPEELTSPSTSSTSSSGTSSAQTPCHNPPELTLAGSRDFVACVPHPHHVFDSGQWGTLEVPGVSGHQPQRASDGRSPADGV | ISTSPAPSAMAAR | No | Alternative | Junction | 13 | 3 | ATG | TGA | TransCirc | No |
chr1|205163722|205169832|-|2|circRNA|DSTYK|NM_015375|4,3 | circDSTYK(4,3) | DSTYK | MHSTKMNSLRGMSKSFRKSESISPFLYSFSKCRNWARR | GMSKSFR | No | Alternative | Alternative | 7 | 1 | ATG | TAA | TransCirc | No |
chr1|205268949|205269884|+|1|circRNA|TMCC2|NM_014858|3 | circTMCC2(3) | TMCC2 | LGAAWWRASRAASLASHRPPTPPWCPSPGSLPASSATSLAVLTTSPT | LGAAWWRASR | No | Alternative | Alternative | 10 | 1 | TTG | TGA | TransCirc | No |
chr1|205308792|205311704|-|1|ciRNA|NUAK2|ENST00000367157.4|2 | ciNUAK2(2) | NUAK2 | LDLGTEHCSSGYGFSGTFRFNRHKNIIVTVCLEGLPQIHPLPATGFKGCEVAGVPQSWEMTSNLAVLQNVPWLAFDSRFYGTKAACTLAEMMRAIGVESQPGIPRRLGLHR | AIGVESQPGIPR | No | Alternative | Alternative | 12 | 1 | CTG | TAA | NA | No |
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