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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1|18918361|18921121|-|3|circRNA|IFFO2|NM_001136265|4,3,2 | circIFFO2(4,3,2) | IFFO2 | LPPNRYHGQAVRCRTAAELRRRVQDLPGGRRSSPSA | RVQDLPGGR | No | Junction | Junction | 9 | 3 | CTG | TGA | TransCirc | No |
chr1|19104690|19105047|-|1|ciRNA|UBR4|NM_020765|85 | ciUBR4(85) | UBR4 | LVLQAPGTVVEVTGILGSDITLYPTLLPKRAPSLIPPCTLM | APSLIPPCTLM | No | Alternative | Junction | 11 | 2 | CTG | TAA | NA | No |
chr1|19124540|19139220|-|7|circRNA|UBR4|NM_020765|65,64,63,62,61,60,59 | circUBR4(65,64,63,62,61,60,59) | UBR4 | LTPILESHLLSLTTRGFTFSPSSSLRRRGQYSSDRWFYPSDLSC | GFTFSPSSSLRR | No | Junction | Junction | 12 | 2 | CTG | TGA | TransCirc | No |
chr1|19176591|19187540|-|9|circRNA|UBR4|NM_020765|20,19,18,17,16,15,14,13,12 | circUBR4(20,19,18,17,16,15,14,13,12) | UBR4 | LLSPPFGWASGSQDSNSRRATTPLYHGFKEVEENWSKHFSSGIRDLGYSQ | EVEENWSKHFSSGIR | No | Junction | Junction | 15 | 1 | CTG | TAA | TransCirc | No |
chr1|19193432|19199754|-|7|circRNA|UBR4|NM_020765|9,8,7,6,5,4,3 | circUBR4(9,8,7,6,5,4,3) | UBR4 | MAILHVGSAQQVRTGSTSSKEDDYESDAATIVQKCFPGTNFSQWQQPVKF | EDDYESDAATIVQKCFPGTNFSQWQQPVK | No | Junction | Junction | 29 | 3 | ATG | TAA | TransCirc | No |
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