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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1|168090563|168104894|-|3|circRNA|GPR161|NM_153832|6,5,4 | circGPR161(6,5,4) | GPR161 | LRSWQVDSPWGTAAARGTLASAAPRTQSSSMLCPPHAEVH | GTLASAAPR | No | Alternative | Junction | 9 | 1 | CTG | TGA | TransCirc | No |
chr1|169862612|169888890|-|9|circRNA|SCYL3|ENST00000367771.10|10,9,8,7,6,5,4,3,2 | circSCYL3(10,9,8,7,6,5,4,3,2) | SCYL3 | LPHCIRDGIREQCFKELYTERTTIYLTLWTCCLSRCTARWQICFSFCV | ELYTERTTIYLTLWTCCLSR | No | Alternative | Alternative | 20 | 1 | CTG | TAA | TransCirc | No |
chr1|169862612|169888890|-|9|circRNA|SCYL3|ENST00000367771.10|10,9,8,7,6,5,4,3,2 | circSCYL3(10,9,8,7,6,5,4,3,2) | SCYL3 | LPHCIRDGIREQCFKELYTERTTIYLTLWTCCLSRCTARWQICFSFCV | EQCFKELYTER | No | Alternative | Alternative | 11 | 1 | CTG | TAA | TransCirc | No |
chr1|171523220|171542229|+|9|circRNA|PRRC2C|NM_015172|8,9,10,11,12,13,14,15,16 | circPRRC2C(8,9,10,11,12,13,14,15,16) | PRRC2C | LKDQNLKKYINLNQKLVGAHDQALTEGKKLMIDL | LKDQNLK | No | Alternative | Alternative | 7 | 3 | CTG | TGA | TransCirc | No |
chr1|171523220|171542229|+|9|circRNA|PRRC2C|NM_015172|8,9,10,11,12,13,14,15,16 | circPRRC2C(8,9,10,11,12,13,14,15,16) | PRRC2C | MEGVAGVVGDTLEIILSIETISQEQSIYPQGLSDSEKKVKHGVRALILKLSPKEDDSGVQRLTQTVKFMKVQVTRTV | EDDSGVQR | No | Alternative | Alternative | 8 | 3 | ATG | TAA | TransCirc | No |
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