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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1|155764999|155766709|-|1|circRNA|GON4L|NM_001282858|21 | circGON4L(21) | GON4L | LMVSQWGLQLGQKLEERRMGQKKRKKRTLMTSPKMRKMKCHQLLRNLCFLSQNSRPVCHPSRKNCGTWLMVLER | TLMTSPK | No | Alternative | Junction | 7 | 2 | TTG | TAG | TransCirc | No |
chr1|155813633|155853806|-|9|circRNA|GON4L|NM_001282858|10,9,8,7,6,5,4,3,2 | circGON4L(10,9,8,7,6,5,4,3,2) | GON4L | LGSKSWQSSWLRSTVFAGCRKSAWYGGYISELWNAHPEHKCTNSRRC | LGSKSWQSSWLR | No | Alternative | Alternative | 12 | 2 | CTG | TGA | TransCirc | No |
chr1|155813633|155853806|-|9|circRNA|GON4L|NM_001282858|10,9,8,7,6,5,4,3,2 | circGON4L(10,9,8,7,6,5,4,3,2) | GON4L | MGPPPPPKPKQTRDSTFMEKLHAVDEELASSPVCMDSFQNGTKVGLLKCCPVRREELQ | DSTFMEKLHAVDEELASSPVCMDSFQNGTK | No | Junction | Junction | 30 | 1 | ATG | TGA | riboCIRC | No |
chr1|155813633|155853806|-|9|circRNA|GON4L|NM_001282858|10,9,8,7,6,5,4,3,2 | circGON4L(10,9,8,7,6,5,4,3,2) | GON4L | MGPPPPPKPKQTRDSTFMEKLHAVDEELASSPVCMDSFQNGTKVGLLKCCPVRREELQ | LHAVDEELASSPVCMDSFQNGTK | No | Junction | Junction | 23 | 1 | ATG | TGA | TransCirc | No |
chr1|155921374|155923687|-|3|circRNA|KIAA0907|ENST00000368321.7|10,9,8 | circKIAA0907(10,9,8) | KIAA0907 | LPALPTGVPPVPTQYPITQVQPPASTGQSPQTRRPGCCQEAL | RPGCCQEAL | No | Alternative | Junction | 9 | 3 | TTG | TGA | TransCirc | No |
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