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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1|149646598|149669310|+|7|circRNA|LINC00869|NR_111950|2,3,4,5,6,7,8 | circLINC00869(2,3,4,5,6,7,8) | LINC00869 | LVTLDTCALGDSGARGRDPRNSPVGDPARDAWGPKGS | NSPVGDPAR | No | Alternative | Alternative | 9 | 3 | CTG | TGA | NA | No |
chr1|149664520|149669310|+|3|circRNA|LINC00869|NR_111950|6,7,8 | circLINC00869(6,7,8) | LINC00869 | LSSCIMKTEFSEKNTGDSPDLPESNFQRINPNAH | NTGDSPDLPESNFQRINPNAH | No | Junction | Junction | 21 | 1 | TTG | TAA | TransCirc | No |
chr1|149934190|149935359|-|4|circRNA|MTMR11|NM_181873|6,5,4,3 | circMTMR11(6,5,4,3) | MTMR11 | LAPENHQFLSWRQRKTGRLSGRSRQPEAGGSARSTRGST | LAPENHQFLSWR | No | Alternative | Alternative | 12 | 1 | CTG | TAG | NA | No |
chr1|15056090|15060302|+|2|circRNA|KAZN|ENST00000376030.6|5,6 | circKAZN(5,6) | KAZN | LSSPTHLPPKATGRPHRATSTPLDTGHTPSATPNSP | ATSTPLDTGHTPSATPNSP | No | Junction | Junction | 19 | 1 | CTG | TAG | TransCirc | No |
chr1|15056090|15063622|+|2|circRNA|KAZN|ENST00000491547.1|5,6 | circKAZN(5,6).A | KAZN | LGQELRRPGVANLLVRRCWGLRGQTGQERTPGTLGKLQAPSISHLGVSASGDGGWAPHCRGRVAPERWHPSTEGPTPHGPPLLSCVTCLCCFIFLFSSGYRATVPAQFRRTCTTLLYRPNSP | ATVPAQFR | No | Alternative | Junction | 8 | 3 | CTG | TAG | NA | No |
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