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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1|117091950|117092709|+|1|ciRNA|TTF2|ENST00000369466.8|17 | ciTTF2(17) | TTF2 | MLFRFFYFCFLVGWRKGGLFILLYFILILIIPMASRIVYFYCLFCFRLTV | KGGLFILLYFILILIIPMASR | No | Alternative | Alternative | 21 | 2 | ATG | TAA | NA | No |
chr1|117402185|117405645|+|2|circRNA|MAN1A2|ENST00000356554.7|2,3 | circMAN1A2(2,3) | MAN1A2 | MMKHAWDNYRTYGWGHNELRPIARKGHSPNIFGKRKNV | GHSPNIFGKR | No | Junction | Junction | 10 | 1 | ATG | TGA | riboCIRC,TransCirc | No |
chr1|11803148|11803404|-|1|ciRNA|MTHFR|ENST00000376583.7|1 | ciMTHFR(1) | MTHFR | LSPRSMLQCRVGAALHARSLAAAEGKALSEAARTAIAEEHGATGRGQCHLFWPSSCVEIQRLRLEPATQVS | ALSEAARTAIAEEHGATGR | No | Alternative | Alternative | 19 | 2 | CTG | TGA | NA | No |
chr1|11803148|11803404|-|1|ciRNA|MTHFR|ENST00000376583.7|1 | ciMTHFR(1) | MTHFR | LSPRSMLQCRVGAALHARSLAAAEGKALSEAARTAIAEEHGATGRGQCHLFWPSSCVEIQRLRLEPATQVS | VGAALHAR | No | Alternative | Alternative | 8 | 2 | CTG | TGA | NA | No |
chr1|11949772|11958647|+|7|circRNA|PLOD1|NM_000302|3,4,5,6,7,8,9 | circPLOD1(3,4,5,6,7,8,9) | PLOD1 | MKLCPRSWSACSSNSPRRLCPCSSSGSCGSTTPRNTCDFSSTTTRLA | NTCDFSSTTTRLA | No | Junction | Junction | 13 | 2 | ATG | TAG | TransCirc | No |
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