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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1|113797362|113798036|-|1|circRNA|RSBN1|ENST00000261441.9|2 | circRSBN1(2) | RSBN1 | LKKIKKKKKKKHREDMRGRRLKMYNKEVQTVCAGLTRISKEILTQGQINSTSGLNKESFRYLKDEQLCRLNLGMQEYRVPQGVQTPFMTHQEHSIRRNFLKTGTKFSNFIHEEHQSNGGALVLHAYMDELSFLSPMEMERFSEEFLALTFSENEKNAAYYALAIVHGAAAYLPDFLDYFAFNFPNTPVKMEILGKKDIETTTISNFHTQKHQMKMVKPREPMILS | HQMKMVKPR | No | Alternative | Junction | 9 | 3 | TTG | TGA | TransCirc | No |
chr1|113829591|113834439|-|4|circRNA|PTPN22|ENST00000359785.9|18,17,16,15 | circPTPN22(18,17,16,15) | PTPN22 | LEKVSQGVRRILTKCSQILILSCEGKNWNITGMGWNI | LEKVSQGVR | No | Alternative | Junction | 9 | 1 | CTG | TGA | TransCirc | No |
chr1|113897839|113902862|-|6|circRNA|AP4B1|NM_001253852|7,6,5,4,3,2 | circAP4B1(7,6,5,4,3,2) | AP4B1 | LVWLCPQCTEAVCQALPGCEENIQDSEVHDSRLGHVWCFYGNGEGQCHCRYCPEEVGLSVHVHICSPETRSGSPGHQYAVQRLLRPQSNGARAGVTEHV | YCPEEVGLSVHVHICSPETR | No | Alternative | Junction | 20 | 3 | CTG | TAG | TransCirc | No |
chr1|115659640|115664268|+|2|circRNA|VANGL1|ENST00000355485.6|3,4 | circVANGL1(3,4) | VANGL1 | LGRDHHGHHRHLGAQHIPRGHCQDQQGHGGQRGAGLQTLPGPHRRLFSWTSSFPHPYCLHPFTSDPVEG | LGRDHHGHHR | Yes | Alternative | Alternative | 10 | 3 | CTG | TGA | TransCirc | No |
chr1|115659640|115664268|+|2|circRNA|VANGL1|ENST00000355485.6|3,4 | circVANGL1(3,4) | VANGL1 | LPSSFYLRSCGGMSWSLVAQFVRGSLSPWHSNSSFCS | SCGGMSWSLVAQFVR | Yes | Alternative | Alternative | 15 | 2 | TTG | TAG | TransCirc | No |
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