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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr16|11767416|11779363|-|10|circRNA|ZC3H7A|ENST00000396516.6|12,11,10,9,8,7,6,5,4,3 | circZC3H7A(12,11,10,9,8,7,6,5,4,3) | ZC3H7A | MDFTYHANIDHKCKKDILIGRIKNVEDKSWKKIRPRPTKTNYEGPYYICKGIFACSREKSF | TNYEGPYYICKGIFACSR | No | Junction | Junction | 18 | 3 | ATG | TAA | TransCirc | No |
chr16|11886470|11887750|-|3|circRNA|GSPT1|ENST00000434724.6|9,8,7 | circGSPT1(9,8,7) | GSPT1 | LASIPKRTFTLCPAQDLLEQISKSSRISVLGTCTCLGP | LASIPKR | No | Alternative | Junction | 7 | 3 | TTG | TAG | TransCirc | No |
chr16|1370129|1370357|-|1|circRNA|UNKL|NM_001193389|3 | circUNKL(3) | UNKL | LHLSPSPAPCPEHHRYTRHPLRPPRRSVRCPSPSQGRWAPQP | SVRCPSPSQGR | No | Alternative | Alternative | 11 | 1 | CTG | TGA | TransCirc | No |
chr16|1370186|1370340|+|1|ciRNA|Unknown|T124967|1 | ciUnknown(1).G | Unknown | MAEEPTGPGRGWDSEPSGEVDAEDGECSDGALGREPGMATGAEPWRLLGRRHG | EPGMATGAEPWR | No | Junction | Junction | 12 | 3 | ATG | TGA | TransCirc | No |
chr16|13930709|13935743|+|4|circRNA|ERCC4|ENST00000311895.7|5,6,7,8 | circERCC4(5,6,7,8) | ERCC4 | LICASDDRTCSQLRDYITLGAEAFLLRLYRKTFEKDSKAEEVWMKFRKEDSSKRIRKSHKRPKDPQNKERASTKERTLKKKKRKLTLTQMVGKPEELEEEGDVEEGYRREISSSPESCPEEIKHEEFDVNLSSDAAFGILKEPLTIIHPLLGCSDPYALTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRQSAIIWILCGTSLEPRLNP | ASRPGKPLRQSAIIWILCGTSLEPR | No | Junction | Junction | 25 | 3 | CTG | TAG | TransCirc | No |
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