top of page
Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr15|98891324|98899621|+|3|circRNA|IGF1R|NM_000875|3,4,5 | circIGF1R(3,4,5) | IGF1R | LENFMGLIEVVTGYVKIRHSHALVSLSFLKNLRLILGEEQLEGVPKHVWEAGVHREQ | HVWEAGVHR | No | Alternative | Junction | 9 | 3 | CTG | TGA | TransCirc | No |
chr15|99156147|99161867|-|2|circRNA|TTC23|ENST00000459771.5|11,10 | circTTC23(11,10) | TTC23 | LSSIFKRAWLILRILKGWEEPNFFQFKMNFAIFYK | MNFAIFYK | No | Alternative | Alternative | 8 | 1 | CTG | TGA | TransCirc | No |
chr15|99218587|99221864|-|3|circRNA|TTC23|ENST00000459771.5|7,6,5 | circTTC23(7,6,5) | TTC23 | LTKAERLSKELLQCGRIIKEEWIEIEARIRLSFAHTNRPSMSLCVA | IRLSFAHTNRPSMSLCVA | No | Junction | Junction | 18 | 2 | TTG | TAG | TransCirc | No |
chr15|99287256|99334129|+|3|circRNA|LRRC28|NM_001284400|4,5,6 | circLRRC28(4,5,6) | LRRC28 | LKELQTLDISTNRLLTLPERLHMCLSLQYLTVDRNRLWYVPRHLCQLPSLNELSMAGNRLAFLPLDTCTQIT | DTCTQIT | No | Alternative | Junction | 7 | 3 | TTG | TAG | TransCirc | No |
chr15|99976044|100054054|-|6|circRNA|ADAMTS17|NM_139057|21,20,19,18,17,16 | circADAMTS17(21,20,19,18,17,16) | ADAMTS17 | LPPTDSATRRSATTGSTPTPSPPPALLSKTRVRGPSTVTGR | GPSTVTGR | No | Alternative | Junction | 8 | 2 | CTG | TAG | NA | No |
Page 1 of 1
bottom of page