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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr15|91915992|91916458|+|1|circRNA|SLCO3A1|ENST00000318445.10|2 | circSLCO3A1(2) | SLCO3A1 | LGPRCSWASVLPLCSPWASPTSTTTCGGRTPRSI | LGPRCSWASVLPLCSPWASPTSTTTCGGR | No | Alternative | Alternative | 29 | 2 | TTG | TAG | TransCirc | No |
chr15|91915992|91916458|+|1|circRNA|SLCO3A1|ENST00000318445.10|2 | circSLCO3A1(2) | SLCO3A1 | LRRHRHGAGRAAVGAARVPDPPVQVRGGRDPLGRRGPRRLRSQRLGRRRGARPRPHLPQPDGYQHDVLAAHWGPGAPGHRCYPCAAPGRLLHRRPRAEEGLLALYR | HGAGRAAVGAAR | No | Alternative | Alternative | 12 | 3 | CTG | TGA | TransCirc | No |
chr15|92120464|92128489|+|3|circRNA|SLCO3A1|ENST00000318445.10|5,6,7 | circSLCO3A1(5,6,7) | SLCO3A1 | LAQPWTPTRPAIITVNAKPIPSLQCVGQMASPTCLPALLAATARDPEGHQAPALKPCVHLHHPGRLHGDCSGGWLRCLFGEVPGAAV | CLFGEVPGAAV | No | Alternative | Junction | 11 | 3 | CTG | TAA | TransCirc | No |
chr15|92901166|92924552|+|2|circRNA|RP11-437B10.1|ENST00000629685.2|5,6 | circRP11-437B10.1(5,6) | RP11-437B10.1 | LKKLRVQTQAVSRKVSREVIQEVDMAASRTAALNLLRVSRNLRANQQVPNPSQSSQKPKRSQPLRRNG | TAALNLLR | No | Alternative | Alternative | 8 | 3 | CTG | TAG | NA | No |
chr15|92967324|92967513|+|1|circRNA|CHD2|ENST00000626874.2|17 | circCHD2(17) | CHD2 | MWRNPFLLKWNRFSGWRCQPFRNSITSLNFGKILKKTMGRGEKMATRVFIRC | GEKMATR | No | Alternative | Junction | 7 | 3 | ATG | TAG | TransCirc | No |
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