top of page
Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr8|30684087|30696479|-|4|circRNA|GSR|ENST00000221130.9|10,9,8,7 | circGSR(10,9,8,7) | GSR | MQLGMYVEKLFLLQPQRHCWCRLHCCGDGRDPVSPGF | MQLGMYVEKLFLLQPQR | No | Junction | Junction | 17 | 2 | ATG | TAA | TransCirc | No |
chr8|31141429|31157530|+|9|circRNA|WRN|NM_000553|25,26,27,28,29,30,31,32,33 | circWRN(25,26,27,28,29,30,31,32,33) | WRN | LPLMTIGMHLSQAVKAGCPLDLERAGLTPEVQKIIADVIRNPPVNSEFSASCRSISQAQFIWHWQGSNRELVEGFFPSADH | ELVEGFFPSADH | No | Alternative | Junction | 12 | 1 | CTG | TGA | TransCirc | No |
chr8|31141429|31157530|+|9|circRNA|WRN|NM_000553|25,26,27,28,29,30,31,32,33 | circWRN(25,26,27,28,29,30,31,32,33) | WRN | LPLMTIGMHLSQAVKAGCPLDLERAGLTPEVQKIIADVIRNPPVNSEFSASCRSISQAQFIWHWQGSNRELVEGFFPSADH | IIADVIRNPPVNSEFSASCR | No | Junction | Junction | 20 | 1 | CTG | TGA | TransCirc | No |
chr8|37431131|37476012|-|4|circRNA|LINC01605|NR_121620|5,4,3,2 | circLINC01605(5,4,3,2) | LINC01605 | MRGDGDFQLIPVTNSRPSYRVQVPSAWPGRTISLCLPLPLALTCLPLNMHFA | GDGDFQLIPVTNSRPSYRVQVPSAWPGR | No | Alternative | Junction | 28 | 3 | ATG | TGA | TransCirc | No |
chr8|37835173|37837939|+|3|circRNA|ADGRA2|NM_032777|12,13,14 | circADGRA2(12,13,14) | ADGRA2 | LREPNLWPLGGARRGPGRLGAGPRRAASSAPASPMSAPCTASTWAMWPCS | GPGRLGAGPR | No | Alternative | Alternative | 10 | 1 | CTG | TGA | NA | No |
Page 1 of 1
bottom of page