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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr7|130554480|130564393|-|5|circRNA|COPG2|ENST00000425248.5|14,13,12,11,10 | circCOPG2(14,13,12,11,10) | COPG2 | LRTVNTLFWLLRFYTCWAKRALERLSPPNISVLFLIGLSWRMRLSELP | LRTVNTLFWLLR | No | Alternative | Junction | 12 | 2 | TTG | TGA | TransCirc | No |
chr7|131429032|131464408|+|6|circRNA|MKLN1|ENST00000421797.6|10,11,12,13,14,15 | circMKLN1(10,11,12,13,14,15) | MKLN1 | MIKLQRIIQLKVFRKKNHVQGLPISLYTMSYTRDCLFVWWLGWNTRSC | KNHVQGLPISLYTMSYTR | No | Alternative | Junction | 18 | 3 | ATG | TGA | TransCirc | No |
chr7|131429032|131464408|+|6|circRNA|MKLN1|ENST00000421797.6|10,11,12,13,14,15 | circMKLN1(10,11,12,13,14,15) | MKLN1 | MIKLQRIIQLKVFRKKNHVQGLPISLYTMSYTRDCLFVWWLGWNTRSC | NHVQGLPISLYTMSYTR | No | Alternative | Junction | 17 | 3 | ATG | TGA | TransCirc | No |
chr7|131437784|131464408|+|5|circRNA|MKLN1|ENST00000421797.6|11,12,13,14,15 | circMKLN1(11,12,13,14,15) | MKLN1 | MIKLQRIIQLKVFRKKNHVQGLPISLYTMSYTRMVLVPDRVIKCALIFNGGKSTHWGVTWIPL | CALIFNGGK | No | Alternative | Junction | 9 | 3 | ATG | TGA | NA | No |
chr7|131437784|131464408|+|5|circRNA|MKLN1|ENST00000421797.6|11,12,13,14,15 | circMKLN1(11,12,13,14,15) | MKLN1 | MIKLQRIIQLKVFRKKNHVQGLPISLYTMSYTRMVLVPDRVIKCALIFNGGKSTHWGVTWIPL | CALIFNGGKSTHWGVTWIPL | No | Alternative | Junction | 20 | 3 | ATG | TGA | NA | No |
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