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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr15|84680712|84691644|-|3|circRNA|SEC11A|NM_001271918|5,4,3 | circSEC11A(5,4,3) | SEC11A | LTKGDNNAVDDRGLYKQGQHWLEKKDVVGRARGSIIKS | ARGSIIK | No | Alternative | Junction | 7 | 2 | TTG | TAA | TransCirc | No |
chr15|84764706|84784895|+|3|circRNA|ZNF592|NM_014630|2,3,4 | circZNF592(2,3,4) | ZNF592 | LMTFWLPLTSQTPPALMPRRPSRHPVRRMRVPSNLQAYVWMKVCPCLTQDQPPMCRP | LMTFWLPLTSQTPPALMPRRPSR | No | Alternative | Alternative | 23 | 3 | TTG | TGA | TransCirc | No |
chr15|84764706|84784895|+|3|circRNA|ZNF592|NM_014630|2,3,4 | circZNF592(2,3,4) | ZNF592 | LQFWAPGPKGGCPRLTDRQEATEHSTAGIHPGPCQPPAQSRALGQPEPRPPQCCCISDSQVFSAKTEPATAYTNVGAPGPPGEKGCPTDCRGLQQGPSQLQPRAPLCAKSQPACGQQDPRAGQWVLLPGVWRRICLREEPEPALWPAERPH | GCPTDCRGLQQGPSQLQPR | No | Alternative | Alternative | 19 | 1 | CTG | TGA | TransCirc | No |
chr15|84764706|84784895|+|3|circRNA|ZNF592|NM_014630|2,3,4 | circZNF592(2,3,4) | ZNF592 | LQFWAPGPKGGCPRLTDRQEATEHSTAGIHPGPCQPPAQSRALGQPEPRPPQCCCISDSQVFSAKTEPATAYTNVGAPGPPGEKGCPTDCRGLQQGPSQLQPRAPLCAKSQPACGQQDPRAGQWVLLPGVWRRICLREEPEPALWPAERPH | LQFWAPGPKGGCPR | No | Alternative | Alternative | 14 | 1 | CTG | TGA | TransCirc | No |
chr15|84764706|84784895|+|3|circRNA|ZNF592|NM_014630|2,3,4 | circZNF592(2,3,4) | ZNF592 | LQRPPARCQGMRCLWKSTFLRQAQIQGAPRGPGKGTRA | QAQIQGAPR | No | Alternative | Alternative | 9 | 3 | TTG | TGA | TransCirc | No |
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