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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr15|78544957|78545632|+|1|ciRNA|PSMA4|ENST00000560217.5|6 | ciPSMA4(6) | PSMA4 | MKFSTGPLSVPSSGCVQIVETKVEFVMELIYGSQNTKQFMNA | FSTGPLSVPSSGCVQIVETK | No | Alternative | Alternative | 20 | 1 | ATG | TAA | NA | No |
chr15|78544957|78545632|+|1|ciRNA|PSMA4|ENST00000560217.5|6 | ciPSMA4(6) | PSMA4 | MKFSTGPLSVPSSGCVQIVETKVEFVMELIYGSQNTKQFMNA | VEFVMELIYGSQNTK | No | Alternative | Alternative | 15 | 1 | ATG | TAA | NA | No |
chr15|78788230|78800547|-|7|circRNA|ADAMTS7|ENST00000388820.4|8,7,6,5,4,3,2 | circADAMTS7(8,7,6,5,4,3,2) | ADAMTS7 | MSPQLLYDAAPLTWSRCSRQYITRFLETCNRGPGGTGHRAPGSSRRGGLLPVLRAVAPRTAQAGCICAPRRARLLRATIPRARAALQPDRQSAPAGARLCERDAAARRPGPRAHPGPHPGLPPAWRGAGP | ATIPRAR | No | Alternative | Junction | 7 | 2 | ATG | TGA | TransCirc | No |
chr15|78788230|78800547|-|7|circRNA|ADAMTS7|ENST00000388820.4|8,7,6,5,4,3,2 | circADAMTS7(8,7,6,5,4,3,2) | ADAMTS7 | MSPQLLYDAAPLTWSRCSRQYITRFLETCNRGPGGTGHRAPGSSRRGGLLPVLRAVAPRTAQAGCICAPRRARLLRATIPRARAALQPDRQSAPAGARLCERDAAARRPGPRAHPGPHPGLPPAWRGAGP | TAQAGCICAPR | No | Alternative | Junction | 11 | 2 | ATG | TGA | TransCirc | No |
chr15|79456097|79458445|+|1|circRNA|KIAA1024|ENST00000305428.7|2 | circKIAA1024(2) | KIAA1024 | LTLNGPFSIEIPPRRSYTIQMPVARPPISQPQKGAQLTLCQRINSQFSPLLMRQNKMGSNLKRSHPLLTWRSMNQSKSLKTRALTAPVGSSAQTPVAWAPRLSTCWSPRNAETCAPLVRASTVTGTP | INSQFSPLLMRQNK | No | Alternative | Alternative | 14 | 1 | CTG | TGA | NA | No |
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