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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr15|72206727|72219110|-|7|circRNA|PKM|NM_001206799|8,7,6,5,4,3,2 | circPKM(8,7,6,5,4,3,2) | PKM | MLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETAKGDYPLEAVRMQHLDLSSHVEAP | GDYPLEAVRMQHLDLSSHVEAP | No | Junction | Junction | 22 | 1 | ATG | TAG | TransCirc | No |
chr15|72265991|72266744|-|1|ciRNA|PARP6|NM_020214|3 | ciPARP6(3) | PARP6 | LESYLFQSKLHPLYVETTHILIRHNYFLTFITLASGGSFIH | LHPLYVETTHILIRHNYFLTFITLASGGSFIH | No | Alternative | Alternative | 32 | 2 | TTG | TAG | NA | No |
chr15|73570149|73592137|-|4|circRNA|NPTN|NM_001161363|6,5,4,3 | circNPTN(6,5,4,3) | NPTN | LLCMRRGRGQMRFLTSQGLSPVKRSLFETALFSLSPCSVTSPPALTPLHTATGQRMGWN | RSLFETALFSLSPCSVTSPPALTPLHTATGQR | No | Alternative | Junction | 32 | 2 | TTG | TGA | TransCirc | No |
chr15|74619196|74620225|+|2|circRNA|CLK3|ENST00000345005.8|2,3 | circCLK3(2,3) | CLK3 | MTACPTRGGTGSAVTAIHTGVKSGAHPLERTTMDLHVLVIVGDRGRGGHTGPASMPTTATNAAPGLVAAPPRCITVSDTAPLNQTRT | GRGGHTGPASMPTTATNAAPGLVAAPPR | No | Alternative | Junction | 28 | 3 | ATG | TGA | TransCirc | No |
chr15|74620225|74622118|+|1|ciRNA|CLK3|ENST00000345005.8|3 | ciCLK3(3) | CLK3 | LHPPLRLICTPLPKGPQSGVPHRTGGFACQPAQTGNFPSDLQPGPLQPSLFTRGSRGEEGQVPV | GEEGQVPV | No | Alternative | Alternative | 8 | 1 | CTG | TGA | NA | No |
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