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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr15|65756139|65756472|-|1|circRNA|DENND4A|ENST00000443035.7|3 | circDENND4A(3) | DENND4A | MFQLLSNLLGRKSHRIISVLMLPQLDCQLILIMEVLWGHRFTFAIEEEEISLHLQIWDVTFCNGR | MFQLLSNLLGR | No | Alternative | Junction | 11 | 3 | ATG | TGA | riboCIRC | No |
chr15|65756139|65756472|-|1|circRNA|DENND4A|ENST00000443035.7|3 | circDENND4A(3) | DENND4A | MIEDKGPRVADYFVVAGLTDVSKPLEEEIHFNDACHKVAKPKEPITDVSVIIKSLGEEVPQDYICIDVTPTGLSADLNNGSLVGPQIYLCYRRGRDKPPLTDLGCNLL | DKPPLTDLGCNLL | No | Junction | Junction | 13 | 2 | ATG | TAA | riboCIRC,TransCirc | No |
chr15|67164894|67165384|+|2|circRNA|SMAD3|ENST00000559460.5|2,3 | circSMAD3(2,3) | SMAD3 | LVPRHTEIPAEFPPLDDYSHSIPENTNFPAGIEPQSNIPGPWMAGCRCPIGRGSLMSSTAACGDGQTCTATTSYGPWSCVSSPSI | HTEIPAEFPPLDDYSHSIPENTNFPAGIEPQSNIPGPWMAGCR | No | Junction | Junction | 43 | 3 | TTG | TGA | TransCirc | No |
chr15|67204148|67208561|-|1|ciRNA|AAGAB|NM_001271886|7 | ciAAGAB(7) | AAGAB | LPRESFVQLGIGIWAEIVEGEIDFKHREGKKIGSIPHMNVSLASGYQKKEEE | IGSIPHMNVSLASGYQK | No | Alternative | Alternative | 17 | 3 | CTG | TAA | NA | No |
chr15|68141945|68173892|+|3|rescued|PIAS1|ENST00000249636|85,105,77|0,344,31870 | circPIAS1(NE,NE,NE) | PIAS1 | MNEKKPTWVCPVCDKKAPYEHLIIDGIRQQSALSRNLFCICLDTTTSAANQ | QQSALSR | Yes | Alternative | Junction | 7 | 1 | ATG | TAG | TransCirc | No |
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