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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr15|64673915|64676256|+|1|circRNA|ZNF609|ENST00000326648.4|4 | circZNF609(4) | ZNF609 | MAHQTPTKADWLASRLKPTRSTVSRTMPPALPLEAVAALKTLPLLSP | ADWLASR | No | Alternative | Alternative | 7 | 1 | ATG | TGA | TransCirc | No |
chr15|64822265|64824354|-|3|circRNA|PIF1|NM_001286496|4,3,2 | circPIF1(4,3,2) | PIF1 | LLSSARRAPLHAFRRGRAQHPAAPRPRHPRGRRSAAAALGLPPRPPAPLPAHIAPQAGCGPGSRAGLRPSAAAGPAAPRLRHHQPCAARGAAAQGGHPGSGHYAGEAACGAPGWGRA | HHQPCAARGAAAQGGHPGSGHYAGEAACGAPGWGR | No | Alternative | Alternative | 35 | 1 | CTG | TAG | TransCirc | No |
chr15|64822265|64824354|-|3|circRNA|PIF1|NM_001286496|4,3,2 | circPIF1(4,3,2) | PIF1 | LRPRVPGRPPPERSCWARGPATSSPSALCSPRSGGSGRPPGFRTLRW | GPATSSPSALCSPR | No | Alternative | Alternative | 14 | 3 | CTG | TGA | TransCirc | No |
chr15|64934135|64951233|+|7|circRNA|ANKDD1A|ENST00000620154.4|6,7,8,9,10,11,12 | circANKDD1A(6,7,8,9,10,11,12) | ANKDD1A | LLTDLQVILLKCTVMQSPGGKCLYTDLFHEDGSKGL | CTVMQSPGGKCLYTDLFHEDGSK | No | Alternative | Alternative | 23 | 1 | CTG | TAA | NA | No |
chr15|64965319|64981025|-|6|circRNA|SPG21|NM_001127889|8,7,6,5,4,3 | circSPG21(8,7,6,5,4,3) | SPG21 | MYRLLWMMMTVRYGRSMTRAPEVSGVLSYSCPLSVELQMSFSGRFWL | APEVSGVLSYSCPLSVELQMSFSGRFWL | No | Alternative | Junction | 28 | 2 | ATG | TGA | riboCIRC,TransCirc | No |
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