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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr15|57437984|57442478|+|3|circRNA|CGNL1|ENST00000281282.5|2,3,4 | circCGNL1(2,3,4) | CGNL1 | LPTAHMPTLKPRKPGQMFFPSGDRIQRDPSWMELGPGGPPRHPQLPRQPTLCTGFYWMIRNVPSMPTTSIVMKTEGIFPSCQELDGILIQDQFLVWIS | DPSWMELGPGGPPRHPQLPR | No | Alternative | Alternative | 20 | 3 | CTG | TAA | TransCirc | No |
chr15|57437984|57518497|+|9|circRNA|CGNL1|ENST00000281282.5|2,3,4,5,6,7,8,9,10 | circCGNL1(2,3,4,5,6,7,8,9,10) | CGNL1 | LCTPERKKKKLCQPEGPWRMNWRLLSWNSEPWSCISVNINMCSRNMGSI | LLSWNSEPWSCISVNINMCSR | No | Junction | Junction | 21 | 2 | TTG | TGA | NA | No |
chr15|57437984|57518497|+|9|circRNA|CGNL1|ENST00000281282.5|2,3,4,5,6,7,8,9,10 | circCGNL1(2,3,4,5,6,7,8,9,10) | CGNL1 | LCTPERKKKKLCQPEGPWRMNWRLLSWNSEPWSCISVNINMCSRNMGSI | LLSWNSEPWSCISVNINMCSRNMGSI | No | Junction | Junction | 26 | 2 | TTG | TGA | NA | No |
chr15|57437984|57518497|+|9|circRNA|CGNL1|ENST00000281282.5|2,3,4,5,6,7,8,9,10 | circCGNL1(2,3,4,5,6,7,8,9,10) | CGNL1 | LCTPERKKKKLCQPEGPWRMNWRLLSWNSEPWSCISVNINMCSRNMGSI | MNWRLLSWNSEPWSCISVNINMCSR | No | Junction | Junction | 25 | 2 | TTG | TGA | NA | No |
chr15|58610296|58633359|-|6|circRNA|ADAM10|ENST00000260408.7|14,13,12,11,10,9 | circADAM10(14,13,12,11,10,9) | ADAM10 | LQPGSPCNDFRGYCDVFMRCRLVDADGPLARLKKAIFSPELYENIAEWIVEALEEYVKKVNSIQMVRRSP | VNSIQMVR | No | Alternative | Junction | 8 | 3 | CTG | TAA | TransCirc | No |
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