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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr8|28356669|28361182|-|3|circRNA|ZNF395|NM_018660|4,3,2 | circZNF395(4,3,2) | ZNF395 | MDEMMAAMVLTSLSCSPVVQSPPGTEANFSGDGQRLQCPLRLRRRGEAAAWRVSCPDALESGPSWEPGCWDPVPRRGPRLPHPRSHC | GDGQRLQCPLR | No | Alternative | Junction | 11 | 2 | ATG | TAG | TransCirc | No |
chr8|28356669|28361182|-|3|circRNA|ZNF395|NM_018660|4,3,2 | circZNF395(4,3,2) | ZNF395 | MDEMMAAMVLTSLSCSPVVQSPPGTEANFSGDGQRLQCPLRLRRRGEAAAWRVSCPDALESGPSWEPGCWDPVPRRGPRLPHPRSHC | GEAAAWRVSCPDALESGPSWEPGCWDPVPR | No | Alternative | Junction | 30 | 2 | ATG | TAG | TransCirc | No |
chr8|28356669|28361182|-|3|circRNA|ZNF395|NM_018660|4,3,2 | circZNF395(4,3,2) | ZNF395 | MDEMMAAMVLTSLSCSPVVQSPPGTEANFSGDGQRLQCPLRLRRRGEAAAWRVSCPDALESGPSWEPGCWDPVPRRGPRLPHPRSHC | GPRLPHPR | No | Alternative | Junction | 8 | 2 | ATG | TAG | TransCirc | No |
chr8|28502669|28528164|+|3|circRNA|FZD3|ENST00000537916.2|2,3,4 | circFZD3(2,3,4) | FZD3 | LGNNVDTRTLQRISHSMSISDISVEGRNSSSPKMESVVWECG | ISHSMSISDISVEGR | No | Junction | Junction | 15 | 1 | CTG | TGA | TransCirc | No |
chr8|28502669|28528164|+|3|circRNA|FZD3|ENST00000537916.2|2,3,4 | circFZD3(2,3,4) | FZD3 | LGNNVDTRTLQRISHSMSISDISVEGRNSSSPKMESVVWECG | TLQRISHSMSISDISVEGR | No | Junction | Junction | 19 | 1 | CTG | TGA | TransCirc | No |
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