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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr15|42651015|42663917|+|4|circRNA|STARD9|TCONS_l2_00009432|8,9,10,11 | circSTARD9(8,9,10,11) | STARD9 | MFSFCRNRVDTGFLLIRLPSGLGHEKLIFVLGFRVECCPTTIISQRGESKKLCDSNIPYRESKVFRNT | LIFVLGFR | No | Alternative | Alternative | 8 | 3 | ATG | TAA | NA | No |
chr15|42651015|42663917|+|4|circRNA|STARD9|TCONS_l2_00009432|8,9,10,11 | circSTARD9(8,9,10,11) | STARD9 | MFSFCRNRVDTGFLLIRLPSGLGHEKLIFVLGFRVECCPTTIISQRGESKKLCDSNIPYRESKVFRNT | VECCPTTIISQR | No | Alternative | Alternative | 12 | 3 | ATG | TAA | NA | No |
chr15|42731619|42734047|-|4|circRNA|CDAN1|ENST00000356231.3|11,10,9,8 | circCDAN1(11,10,9,8) | CDAN1 | LTSWGGCGAYRNGLWLLRAVGGPAHPPPSQAVKASLGTSSLVPAGLSGDASLYSSCLLSARD | ASLGTSSLVPAGLSGDASLYSSCLLSAR | No | Junction | Junction | 28 | 2 | CTG | TGA | TransCirc | No |
chr15|42950261|42970607|-|7|circRNA|UBR1|ENST00000290650.8|46,45,44,43,42,41,40 | circUBR1(46,45,44,43,42,41,40) | UBR1 | LVEGKARGCAYPAPYLDEYGETDPGLKPTPCSGSRRQ | ARGCAYPAPYLDEYGETDPGLKPTPCSGSR | No | Junction | Junction | 30 | 2 | CTG | TGA | TransCirc | No |
chr15|43015687|43022801|-|4|circRNA|UBR1|ENST00000290650.8|29,28,27,26 | circUBR1(29,28,27,26) | UBR1 | MIKKKQNEKEKLKLLGYIARRSWLRCLPYRKTSLKLINSCMTIHQKCLGKKIPLWRKRGFSYSGIGFTRREATASKSS | RGFSYSGIGFTR | No | Junction | Junction | 12 | 2 | ATG | TGA | TransCirc | No |
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