top of page
Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr15|41520390|41521147|-|1|circRNA|RPAP1|ENST00000565167.1|2 | circRPAP1(2) | RPAP1 | LPGPPQHPQLLPDSLLASPSQSAGLPGSAPRGATASPNPATAHAYGAAAAHRLALPATDSPLPPGFRHPLGTLSHRHHGHSHAGPAVGASFGELAPPGSLGCAPCCPPGTAHVCVPGGQ | LALPATDSPLPPGFR | No | Alternative | Alternative | 15 | 1 | CTG | TGA | NA | No |
chr15|41696074|41736698|+|11|circRNA|MGA|ENST00000545763.5|3,4,5,6,7,8,9,10,11,12,13 | circMGA(3,4,5,6,7,8,9,10,11,12,13) | MGA | MIWLRNLDQRLLMVHCPLGKWRISLLCRQMPWIQ | LLMVHCPLGKWR | No | Alternative | Alternative | 12 | 1 | ATG | TGA | NA | No |
chr15|41710690|41729349|+|4|circRNA|MGA|ENST00000545763.5|8,9,10,11 | circMGA(8,9,10,11) | MGA | MSEKKRTRDNHLPPPPHLHHFSSKLHVILALRTIIMQRWKFRKFTEKSFCFL | DNHLPPPPHLHHFSSK | No | Alternative | Junction | 16 | 2 | ATG | TAG | NA | No |
chr15|41748636|41750615|+|2|circRNA|MGA|ENST00000545763.5|15,16 | circMGA(15,16) | MGA | LNVILGVGFLILQPSPLFLGELQKAAEGMDIFRVTYCYLENRYNQSKRRRVGEAVLTSLFWIWKKMMKMIMRKLMILLMKLWMLFLTTRVRRLMM | VGEAVLTSLFWIWK | No | Alternative | Alternative | 14 | 1 | CTG | TAG | TransCirc | No |
chr15|41919209|41953940|-|3|circRNA|EHD4|ENST00000220325.8|4,3,2 | circEHD4(4,3,2) | EHD4 | LQWFAERVDRIILLFDAHKLDISDEFSEAIKAFRGQDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVINTPEVLRVYIGSFWAQPLQNTDNRRLFEAEAQDLFRDIQSLPQKAAVRKLNDLIKRARLAKIPTGAGFPRHEDWSGAHHRLLHRRDVWRD | HEDWSGAHHRLLHR | No | Alternative | Junction | 14 | 3 | CTG | TGA | TransCirc | No |
Page 1 of 1
bottom of page