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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr15|33153047|33155045|-|1|circRNA|FMN1|NM_001277313|4 | circFMN1(4) | FMN1 | LTPHNPEVIRRSHPHQHRQLLARCLIIQPRSPAHTNRRHLFPRLCLQGSPALSSITGSSGSLHCLVRGKLLLMTLLVERAVSSLGASLLTPWSHHPLQRSRRPKEPARPSSEQANLGWCLGKLWKRAWGQGRPQLSPSTSHLQAVSLLEMTVSCFLCIATITCLTTGAWEA | LLLMTLLVERAVSSLGASLLTPWSHHPLQR | No | Alternative | Junction | 30 | 1 | CTG | TGA | TransCirc | No |
chr15|33153047|33155045|-|1|circRNA|FMN1|NM_001277313|4 | circFMN1(4) | FMN1 | MGHLPAPCRGERAAPQIFPRRQTQTLALGALRRLSRTLGLEEKCCPLTAAPQRQEGMAFGGRRAGWSISKQVCLKVTRTLRSIQRQKRMRWRSRLSGLASRNLSPKWWPKFRTCPPRYKE | AAPQIFPR | No | Alternative | Alternative | 8 | 1 | ATG | TAG | TransCirc | No |
chr15|33153047|33155045|-|1|circRNA|FMN1|NM_001277313|4 | circFMN1(4) | FMN1 | MGHLPAPCRGERAAPQIFPRRQTQTLALGALRRLSRTLGLEEKCCPLTAAPQRQEGMAFGGRRAGWSISKQVCLKVTRTLRSIQRQKRMRWRSRLSGLASRNLSPKWWPKFRTCPPRYKE | LSGLASR | No | Alternative | Alternative | 7 | 1 | ATG | TAG | TransCirc | No |
chr15|33153047|33155045|-|1|circRNA|FMN1|NM_001277313|4 | circFMN1(4) | FMN1 | MKPLRGKDWASLSTRVSLTLAQKRETRGEPGCPLVATSPCFWICPTK | VSLTLAQKR | No | Alternative | Alternative | 9 | 1 | ATG | TAG | TransCirc | No |
chr15|33153047|33155045|-|1|circRNA|FMN1|NM_001277313|4 | circFMN1(4) | FMN1 | MTVSRVLVTGRESSPWALSIRGAPTGTKSLGGLVEGERALGPFHRRGPKEKGVEAENQLL | ALGPFHRR | No | Alternative | Alternative | 8 | 1 | ATG | TGA | TransCirc | No |
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