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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr15|29704161|29709036|-|3|circRNA|TJP1|NM_001301026|27,26,25 | circTJP1(27,26,25) | TJP1 | LLRQLSIPRKVFQIKPQLMELNRLRKQSLQHTIDSHQNHIQVLPDHLNASLKVLNSITIFCQVKLHINLTCLQKLPLLQKLL | KVFQIKPQLMELNR | No | Alternative | Alternative | 14 | 1 | CTG | TGA | NA | No |
chr15|29704161|29709036|-|3|circRNA|TJP1|NM_001301026|27,26,25 | circTJP1(27,26,25) | TJP1 | LLRQLSIPRKVFQIKPQLMELNRLRKQSLQHTIDSHQNHIQVLPDHLNASLKVLNSITIFCQVKLHINLTCLQKLPLLQKLL | LHINLTCLQK | No | Alternative | Alternative | 10 | 1 | CTG | TGA | NA | No |
chr15|29704161|29709036|-|3|circRNA|TJP1|NM_001301026|27,26,25 | circTJP1(27,26,25) | TJP1 | LLRQLSIPRKVFQIKPQLMELNRLRKQSLQHTIDSHQNHIQVLPDHLNASLKVLNSITIFCQVKLHINLTCLQKLPLLQKLL | VFQIKPQLMELNR | No | Alternative | Alternative | 13 | 1 | CTG | TGA | NA | No |
chr15|29704161|29709036|-|3|circRNA|TJP1|NM_001301026|27,26,25 | circTJP1(27,26,25) | TJP1 | LLRQLSIPRKVFQIKPQLMELNRLRKQSLQHTIDSHQNHIQVLPDHLNASLKVLNSITIFCQVKLHINLTCLQKLPLLQKLL | VFQIKPQLMELNRLR | No | Alternative | Alternative | 15 | 1 | CTG | TGA | NA | No |
chr15|29704161|29709036|-|3|circRNA|TJP1|NM_001301026|27,26,25 | circTJP1(27,26,25) | TJP1 | LLRQLSIPRKVFQIKPQLMELNRLRKQSLQHTIDSHQNHIQVLPDHLNASLKVLNSITIFCQVKLHINLTCLQKLPLLQKLL | VLNSITIFCQVK | No | Alternative | Alternative | 12 | 1 | CTG | TGA | NA | No |
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