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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr14|99458278|99463578|-|4|circRNA|SETD3|ENST00000331768.9|6,5,4,3 | circSETD3(6,5,4,3) | SETD3 | MTLLSTLKKMKFGIFSPHKLYMMSSASIKTQLDSTPTSIKSSRMQQSGAWPRKRVGRVCADPDSG | MQQSGAWPR | No | Alternative | Junction | 9 | 1 | ATG | TGA | riboCIRC,TransCirc | No |
chr14|99458278|99463578|-|4|circRNA|SETD3|ENST00000331768.9|6,5,4,3 | circSETD3(6,5,4,3) | SETD3 | MTLLSTLKKMKFGIFSPHKLYMMSSASIKTQLDSTPTSIKSSRMQQSGAWPRKRVGRVCADPDSG | SSRMQQSGAWPR | No | Junction | Junction | 12 | 1 | ATG | TGA | riboCIRC,TransCirc | No |
chr15|100048856|100096476|-|4|circRNA|ADAMTS17|NM_139057|18,17,16,15 | circADAMTS17(18,17,16,15) | ADAMTS17 | LVNDSDCPQASRPEPQVRRCNLHPCQSRKSAVTASSGLQPKRTDAGSAAGTARPATW | SAVTASSGLQPK | No | Alternative | Junction | 12 | 3 | CTG | TGA | TransCirc | No |
chr15|100152611|100155320|-|2|circRNA|ADAMTS17|NM_139057|10,9 | circADAMTS17(10,9) | ADAMTS17 | LLASHGPQKPAHSTPPAQAAGHALQCQRAVPDPVWHECHLLQKHGAWA | AVPDPVWHECHLLQKHGAWA | No | Junction | Junction | 20 | 1 | CTG | TGA | TransCirc | No |
chr15|100254135|100281401|-|4|circRNA|ADAMTS17|NM_139057|7,6,5,4 | circADAMTS17(7,6,5,4) | ADAMTS17 | MNRVTLLKRRSRRGAGLRGTGGSGGTLSGSPASTRWRPWWWPTPTWCSTTGPRPPRGSS | GTGGSGGTLSGSPASTR | No | Alternative | Junction | 17 | 3 | ATG | TGA | riboCIRC,TransCirc | No |
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