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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr8|22414779|22416280|+|3|circRNA|SLC39A14|ENST00000359741.9|5,6,7 | circSLC39A14(5,6,7) | SLC39A14 | LQASQSACYWLKGVRYSDIGTLAWMITLSDGLHNFIDGLAIGASFTVSVFQGISTSVAILCEEFPHELGIWFQPSGRLLCLQVCSGVWGLLSFLFHREDLEDSS | LLCLQVCSGVWGLLSFLFHREDLEDSS | No | Alternative | Junction | 27 | 1 | CTG | TAA | TransCirc | No |
chr8|22636677|22636921|-|1|ciRNA|BIN3|ENST00000276416.10|3 | ciBIN3(3) | BIN3 | LEAEGSSGHQAAGTVPWQWPCESHSLIAFGCSGTSVSGKSPRGEDPFLVSVNPRKMRWEAGRDKGPLPGLTCLPRALPREHPGS | GEDPFLVSVNPR | No | Junction | Junction | 12 | 2 | CTG | TGA | NA | No |
chr8|23027132|23029721|-|4|circRNA|TNFRSF10B|ENST00000276431.8|7,6,5,4 | circTNFRSF10B(7,6,5,4) | TNFRSF10B | LQPTQVPEQEMEVQEPAEPTGVNMLSPGESEHLLVKWS | LQPTQVPEQEMEVQEPAEPTGVNMLSPGESEHLLVK | No | Junction | Junction | 36 | 1 | TTG | TAA | TransCirc | No |
chr8|23442098|23443849|-|1|ciRNA|ENTPD4|ENST00000356206.10|6 | ciENTPD4(6) | ENTPD4 | LQQRNRGRDGLDGLPKVTMKPRCRECENRIRLGS | GRDGLDGLPK | No | Alternative | Alternative | 10 | 1 | TTG | TGA | NA | No |
chr8|23442098|23443849|-|1|ciRNA|ENTPD4|ENST00000356206.10|6 | ciENTPD4(6) | ENTPD4 | MPEHGKGGALREGQEAHTRQKKGLDSGQVGKRALWTEKHKCFSLTGWWPFWKEWREC | GLDSGQVGK | No | Alternative | Alternative | 9 | 2 | ATG | TAA | NA | No |
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