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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr14|75863666|75902224|+|3|circRNA|TTLL5|NM_015072|29,30,31 | circTTLL5(29,30,31) | TTLL5 | MDSRAALTLQPLCPSPALQEPADRGICLGRRSRKQRVQPGYRGGPPAQVSPHSRQLSASICPAAT | AALTLQPLCPSPALQEPADR | Yes | Junction | Junction | 20 | 3 | ATG | TGA | TransCirc | No |
chr14|75863666|75902224|+|3|circRNA|TTLL5|NM_015072|29,30,31 | circTTLL5(29,30,31) | TTLL5 | MDSRAALTLQPLCPSPALQEPADRGICLGRRSRKQRVQPGYRGGPPAQVSPHSRQLSASICPAAT | AALTLQPLCPSPALQEPADRGICLGR | Yes | Junction | Junction | 26 | 3 | ATG | TGA | TransCirc | No |
chr14|77249458|77251760|+|1|ciRNA|TMEM63C|NM_020431|21 | ciTMEM63C(21) | TMEM63C | LFPAPFPGMRFGALGMGTLRGSSWSIVTLQNCDSPYCNIQSCTLRFCTEHNVLSNFLGC | LFPAPFPGMR | No | Alternative | Alternative | 10 | 1 | TTG | TAA | NA | No |
chr14|77249458|77251760|+|1|ciRNA|TMEM63C|NM_020431|21 | ciTMEM63C(21) | TMEM63C | MTHHLTQNLMSFVPSPLSRHALWGFGHGNIEREQLVYCYFAKLR | HALWGFGHGNIER | No | Alternative | Alternative | 13 | 2 | ATG | TAG | NA | No |
chr14|77296163|77298771|-|2|circRNA|POMT2|NM_013382|9,8 | circPOMT2(9,8) | POMT2 | LAYGSVITVKNLRMAIGYLHSHRHLYPEGIGARQQQWPW | HLYPEGIGARQQQWPW | No | Junction | Junction | 16 | 3 | CTG | TGA | TransCirc | No |
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