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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr14|70166638|70168484|-|1|circRNA|SLC8A3|ENST00000356921.6|2 | circSLC8A3(2) | SLC8A3 | MVFEQRLVAQGTCQAQGRTMSPVQGHRTARRVSSCQSGTRRTLPLGTRLPGSLSILWP | TMSPVQGHR | No | Alternative | Alternative | 9 | 1 | ATG | TGA | riboCIRC,TransCirc | No |
chr14|70166638|70168484|-|1|circRNA|SLC8A3|ENST00000356921.6|2 | circSLC8A3(2) | SLC8A3 | MVFEQRLVAQGTCQAQGRTMSPVQGHRTARRVSSCQSGTRRTLPLGTRLPGSLSILWP | TMSPVQGHRTAR | No | Alternative | Alternative | 12 | 1 | ATG | TGA | riboCIRC,TransCirc | No |
chr14|70761001|70801080|-|2|circRNA|MAP3K9|ENST00000554752.6|3,2 | circMAP3K9(3,2).A | MAP3K9 | LILQKVENGDLSNKILKITDFGLAREWHRTTKMSAAGTYAWMAPEVIRASMFSKGSDVWSVRN | ASMFSKGSDVWSVR | No | Junction | Junction | 14 | 3 | TTG | TGA | TransCirc | No |
chr14|71310557|71311376|-|1|circRNA|RP1-261D10.2|TCONS_00022786|3 | circRP1-261D10.2(3) | RP1-261D10.2 | MKRGLLMTWKRWAEASQDHLACSIASQSGGDIHTNPGAAGARELQLPCGIQGVRSEIPQEKSRFACS | GLLMTWKR | No | Alternative | Alternative | 8 | 3 | ATG | TGA | NA | No |
chr14|71650334|71661467|+|3|circRNA|SIPA1L1|NM_001284245|5,6,7 | circSIPA1L1(5,6,7) | SIPA1L1 | LFSKSLEHSHSAQKTSDPTSSTFSSSSGCTIRALTVSVIAELPAESRHHVLQSWTEH | ALTVSVIAELPAESR | No | Junction | Junction | 15 | 2 | TTG | TGA | NA | No |
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