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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr14|55151694|55154806|-|3|circRNA|DLGAP5|ENST00000395425.6|17,16,15 | circDLGAP5(17,16,15) | DLGAP5 | LSLLKALLKDLEHLSLSTKLYLRVEMRWAFHNKLHHQKMPVLRIRKVNM | MPVLRIR | No | Alternative | Alternative | 7 | 2 | CTG | TGA | TransCirc | No |
chr14|55158521|55189180|-|13|circRNA|DLGAP5|ENST00000395425.6|14,13,12,11,10,9,8,7,6,5,4,3,2 | circDLGAP5(14,13,12,11,10,9,8,7,6,5,4,3,2) | DLGAP5 | MRERIRQEECAETAVSVIPKEVDKIVFDAGFFRVESPVKLFSGCLHHILPVDTGRI | LFSGCLHHILPVDTGR | No | Junction | Junction | 16 | 1 | ATG | TAA | TransCirc | No |
chr14|55612018|55612571|+|1|circRNA|KTN1|NM_001079521|2 | circKTN1(2) | KTN1 | MMKFLQNRKENKSLFLPKQIKRKQKRKRIKRKKSRMETSMNPTLRVYLETLNYQMLWQ | METSMNPTLR | No | Alternative | Alternative | 10 | 2 | ATG | TAG | TransCirc | No |
chr14|55612018|55679685|+|42|circRNA|KTN1|NM_001079521|2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43 | circKTN1(2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43) | KTN1 | MSVSLNQTVTQLQQLLQAVNQQLTKEKEHYQVLGFIGSH | EHYQVLGFIGSH | No | Junction | Junction | 12 | 1 | ATG | TGA | TransCirc | No |
chr14|55673012|55675828|+|1|ciRNA|KTN1|NM_001079522|39 | ciKTN1(39) | KTN1 | LSFPLWASRTVSKVPMGGKQKQLPYENKKKVFWEQYSSFSLLIFNWKIREAALYIRIGVTELSVLTDWVIHRYIVKHFLMV | EAALYIR | No | Alternative | Alternative | 7 | 1 | TTG | TAA | NA | No |
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