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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr14|54776540|54784536|+|1|ciRNA|SAMD4A|ENST00000554335.5|11 | ciSAMD4A(11) | SAMD4A | LGILERRALRFSAPFLEHAIPGLENGILLRVGKKSCS | ALRFSAPFLEHAIPGLENGILLR | No | Alternative | Alternative | 23 | 2 | TTG | TGA | NA | No |
chr14|54776540|54784536|+|1|ciRNA|SAMD4A|ENST00000554335.5|11 | ciSAMD4A(11) | SAMD4A | LGPVGCGRGCHAEAETRTGTQVQYWINISSMSSNKSRQTSLFRTGRQWVGRLINKSILS | LGPVGCGRGCHAEAETR | No | Alternative | Alternative | 17 | 1 | CTG | TAG | NA | No |
chr14|54776540|54784536|+|1|ciRNA|SAMD4A|ENST00000554335.5|11 | ciSAMD4A(11) | SAMD4A | LGRLGPDSPLSKSWVVPERFGFVDRIFHLYLCFPSTISQQCQVAGLCSGQL | SWVVPERFGFVDR | No | Alternative | Alternative | 13 | 1 | CTG | TGA | NA | No |
chr14|54776540|54784536|+|1|ciRNA|SAMD4A|ENST00000554335.5|11 | ciSAMD4A(11) | SAMD4A | LIANKPLNAGQEPLLSPAQHAQHHAGWLFQDMHKGHDRAGPGQDPGSLTEGEGGCRRPLLKGTGLRFLSPCQSLSRPQVTVVTFPSSQGGSLLPRDDTSDLQAGPDEGSS | GTGLRFLSPCQSLSRPQVTVVTFPSSQGGSLLPR | No | Alternative | Alternative | 34 | 1 | CTG | TAG | NA | No |
chr14|54776540|54784536|+|1|ciRNA|SAMD4A|ENST00000554335.5|11 | ciSAMD4A(11) | SAMD4A | LPSTLSTMLGGSSRTCIKGMIGQGLARTQDPSLKGKEAAEGPCLRAQG | GMIGQGLAR | No | Alternative | Alternative | 9 | 1 | CTG | TGA | NA | No |
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