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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr14|22812899|22815451|-|2|circRNA|SLC7A7|ENST00000285850.11|3,2 | circSLC7A7(3,2) | SLC7A7 | LFPPRVCSYTVPPLVSLWSSGLSGASSPSLGPFVMRNWAPPLRNLGPAMPISWRPLEDSLLSSDSGPPCSSLSPPARPSLPSPLPTTWYSLSSRAASPLMLPAACWLLPAFAFVWPSLLLLAGKEEHQTTDPGRHFSP | LFPPRVCSYTVPPLVSLWSSGLSGASSPSLGPFVMR | No | Alternative | Junction | 36 | 2 | TTG | TGA | TransCirc | No |
chr14|22841490|22843418|+|4|circRNA|MMP14|NM_004995|2,3,4,5 | circMMP14(2,3,4,5) | MMP14 | LVAVHELGHALGLEHSSDPSAIMAPFYQWMDTENFVLPDDDRRGIQQLYGLATAIWLPASRGPTYPHTALTPVTLSGHRCHAEVLRLASNRQS | GPTYPHTALTPVTLSGHR | No | Alternative | Junction | 18 | 3 | CTG | TGA | TransCirc | No |
chr14|22841490|22843418|+|4|circRNA|MMP14|NM_004995|2,3,4,5 | circMMP14(2,3,4,5) | MMP14 | LVAVHELGHALGLEHSSDPSAIMAPFYQWMDTENFVLPDDDRRGIQQLYGLATAIWLPASRGPTYPHTALTPVTLSGHRCHAEVLRLASNRQS | GPTYPHTALTPVTLSGHRCHAEVLR | No | Alternative | Junction | 25 | 3 | CTG | TGA | TransCirc | No |
chr14|23061083|23064485|-|8|circRNA|ACIN1|ENST00000557515.5|11,10,9,8,7,6,5,4 | circACIN1(11,10,9,8,7,6,5,4) | ACIN1 | LLDDLFRKTKAAPCIYWLPLTDSQLPRGCQLETVTQRGASLVGNDAGEPAQPPHRRNLPSVSPLNH | AAPCIYWLPLTDSQLPR | No | Junction | Junction | 17 | 3 | CTG | TAA | TransCirc | No |
chr14|23301878|23302159|-|1|ciRNA|PPP1R3E|ENST00000452015.8|1 | ciPPP1R3E(1) | PPP1R3E | LPKSTHLHPIPGLAPAHPFWGPHLRVALGHPGSWAALCRPGRRGRPLIGPVPCSDTAPCLSPLSALGSLLVGGGGTSPPGDLLQSAAAGLWEWICQRAPISIPSLGLRLPIPFGDPICEWL | APISIPSLGLR | No | Alternative | Junction | 11 | 3 | TTG | TAG | NA | No |
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