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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr14|100342397|100346846|-|3|circRNA|WARS|NM_004184|9,8,7 | circWARS(9,8,7) | WARS | MTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKDELRFLQKCGEDSKACYLQPSERHFRLH | ACYLQPSERHFR | No | Alternative | Junction | 12 | 1 | ATG | TGA | TransCirc | No |
chr14|100342397|100346846|-|3|circRNA|WARS|NM_004184|9,8,7 | circWARS(9,8,7) | WARS | MTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKDELRFLQKCGEDSKACYLQPSERHFRLH | FLQKCGEDSK | No | Alternative | Junction | 10 | 1 | ATG | TGA | TransCirc | No |
chr14|100354446|100361921|-|3|circRNA|WARS|NM_004184|5,4,3 | circWARS(5,4,3) | WARS | MNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKMKLILQ | GPSSEAMHVGHLIPFIFTKMK | No | Junction | Junction | 21 | 2 | ATG | TAA | TransCirc | No |
chr14|100380909|100381746|+|1|circRNA|WDR25|NM_001161476|2 | circWDR25(2) | WDR25 | LGILPQPEATVAREGASSHLPHQRAFLFFSVDEPCSSQPHAPGSCPL | LGILPQPEATVAR | No | Alternative | Alternative | 13 | 3 | TTG | TAA | TransCirc | No |
chr14|100380909|100381746|+|1|circRNA|WDR25|NM_001161476|2 | circWDR25(2) | WDR25 | MMIRTRRLRQSMQEVLMLPASRKTLLVWPDHLGRILHLVHWMCPKQGHSPQSMAPVKTQGAIAFHWLSLGEAIGDLAPARGYSGPGRSLKSPSPSKSLLVLLCGRAMFQPATCPWQLPALSK | GYSGPGR | No | Alternative | Alternative | 7 | 2 | ATG | TAA | TransCirc | No |
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