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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr13|49460106|49467960|+|4|circRNA|SETDB2|NM_031915|3,4,5,6 | circSETDB2(3,4,5,6) | SETDB2 | MPVTQKEQENKSNAFPSTSCENSFPEDCTFLRCKNFLDGARR | NFLDGAR | No | Alternative | Junction | 7 | 3 | ATG | TGA | riboCIRC,TransCirc | No |
chr13|49997073|50044768|-|4|circRNA|DLEU2|ENST00000621282.4|11,10,9,8 | circDLEU2(11,10,9,8) | DLEU2 | LVAGPGRLRTEQVFWTTDTLPRRPPQAAPPQAHDSAPLVSAALPDWSSDGLRQPPQPTQIPADLGNSPPSLKVRGPPRFPERSRAAGTYLRPPASGKGRATARPPTTGTARWIITVPSSWKKFYLKCYFSLNTIKKEKKMT | LVAGPGR | No | Alternative | Junction | 7 | 3 | CTG | TAA | TransCirc | No |
chr13|51374207|51376174|-|3|circRNA|INTS6|NM_001039937|16,15,14 | circINTS6(16,15,14) | INTS6 | MKQMNLWLDLKININDPENQICKGSLKDVGVCLHY | DVGVCLHY | No | Alternative | Alternative | 8 | 2 | ATG | TAA | TransCirc | No |
chr13|51957515|51975168|-|8|circRNA|ATP7B|NM_000053|9,8,7,6,5,4,3,2 | circATP7B(9,8,7,6,5,4,3,2) | ATP7B | LPSNWGHGLRGQHCRRKGSLLALKVLACPGGCGQAPGGGHDLPVLCQLH | GSLLALK | No | Alternative | Alternative | 7 | 2 | TTG | TGA | TransCirc | No |
chr13|51957613|51958310|-|1|ciRNA|ATP7B|NM_000053|8 | ciATP7B(8) | ATP7B | LCKLKKPGLQGRAYIVSWCKTEYVVGLDIHTSSSRSCHF | KPGLQGR | No | Alternative | Alternative | 7 | 1 | TTG | TAA | NA | No |
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