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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr13|39687502|39727548|+|10|circRNA|COG6|NM_020751|9,10,11,12,13,14,15,16,17,18 | circCOG6(9,10,11,12,13,14,15,16,17,18) | COG6 | MNLEQPEEVQLFVDLLMRSQEGAPEVHLDQLKCILMTL | SQEGAPEVHLDQLKCILMTL | No | Alternative | Alternative | 20 | 2 | ATG | TGA | NA | No |
chr13|40940920|40943144|-|2|circRNA|ELF1|NM_001145353|7,6 | circELF1(7,6) | ELF1 | LAKVEGQRLVYQFKEMPKDLIYINDEDPSSSIESSDPSLSSSATSNRNQTSRSRVSSSPGVKGGATTVLKPGNSKAAKPKDPVEVAQPSEVLRTVQPTQSPYPTQLFRTVHVVQPVQAVPEGEAARTSTMQDETLNSSVQSIRKHNLSLGVFTGTAPGQGYLS | HNLSLGVFTGTAPGQGYLS | No | Alternative | Junction | 19 | 2 | CTG | TAA | TransCirc | No |
chr13|40940920|40943144|-|2|circRNA|ELF1|NM_001145353|7,6 | circELF1(7,6) | ELF1 | LAKVEGQRLVYQFKEMPKDLIYINDEDPSSSIESSDPSLSSSATSNRNQTSRSRVSSSPGVKGGATTVLKPGNSKAAKPKDPVEVAQPSEVLRTVQPTQSPYPTQLFRTVHVVQPVQAVPEGEAARTSTMQDETLNSSVQSIRKHNLSLGVFTGTAPGQGYLS | KHNLSLGVFTGTAPGQGYLS | No | Alternative | Junction | 20 | 2 | CTG | TAA | TransCirc | No |
chr13|40940920|40943144|-|2|circRNA|ELF1|NM_001145353|7,6 | circELF1(7,6) | ELF1 | LAKVEGQRLVYQFKEMPKDLIYINDEDPSSSIESSDPSLSSSATSNRNQTSRSRVSSSPGVKGGATTVLKPGNSKAAKPKDPVEVAQPSEVLRTVQPTQSPYPTQLFRTVHVVQPVQAVPEGEAARTSTMQDETLNSSVQSIRKHNLSLGVFTGTAPGQGYLS | TSTMQDETLNSSVQSIRK | No | Junction | Junction | 18 | 2 | CTG | TAA | TransCirc | No |
chr13|41240260|41260915|-|5|circRNA|MTRF1|ENST00000379480.8|6,5,4,3,2 | circMTRF1(6,5,4,3,2) | MTRF1 | MRVGFTEFSASPRWACPQGCSAFTQERCRLLSFLSQMRC | LLSFLSQMR | No | Alternative | Junction | 9 | 1 | ATG | TGA | TransCirc | No |
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