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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr8|143927409|143927766|-|1|circRNA|PLEC|ENST00000345136.7|27 | circPLEC(27) | PLEC | LAGCAGPDRRAAARARATGPPAALLPRECRPLGRLAAGRQAAAGADPGHAAGRQPGCAGAAAAGAEAAGPGRGTAAHVRRPAG | GTAAHVR | No | Alternative | Junction | 7 | 3 | CTG | TGA | TransCirc | No |
chr8|143927409|143927766|-|1|circRNA|PLEC|ENST00000345136.7|27 | circPLEC(27) | PLEC | LAGCAGPDRRAAARARATGPPAALLPRECRPLGRLAAGRQAAAGADPGHAAGRQPGCAGAAAAGAEAAGPGRGTAAHVRRPAG | LAAGRQAAAGADPGHAAGR | No | Alternative | Junction | 19 | 3 | CTG | TGA | TransCirc | No |
chr8|144163770|144200541|+|10|circRNA|MROH1|NM_001099280|3,4,5,6,7,8,9,10,11,12 | circMROH1(3,4,5,6,7,8,9,10,11,12) | MROH1 | LTAYWPSCCPGWTPAMRGPAWAPCRWSDMSSTQLMGEEVVHVHTG | WSDMSSTQLMGEEVVHVHTG | No | Junction | Junction | 20 | 1 | CTG | TGA | TransCirc | No |
chr8|144262395|144276304|-|13|circRNA|BOP1|NM_015201|15,14,13,12,11,10,9,8,7,6,5,4,3 | circBOP1(15,14,13,12,11,10,9,8,7,6,5,4,3) | BOP1 | LWPSTRGTHSLRQARTTAVSSSAMAWCTSQHSLPEDRDGERPDWG | TTAVSSSAMAWCTSQHSLPEDRDGERPDWG | No | Junction | Junction | 30 | 3 | CTG | TGA | NA | No |
chr8|144263830|144264142|-|2|circRNA|BOP1|NM_015201|9,8 | circBOP1(9,8) | BOP1 | LRTSSPSCLGRGTCSPSPRARPCAWRGNSRSQARGS | GTCSPSPR | No | Alternative | Junction | 8 | 2 | CTG | TGA | TransCirc | No |
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