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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr13|28256291|28267401|+|6|circRNA|PAN3|ENST00000503791.5|7,8,9,10,11,12 | circPAN3(7,8,9,10,11,12) | PAN3 | MTLMLMPTSPRESGECRCLLGLPLFIPPRLLHILLLLPEEEVTLQIQQVTWCLLVPLHLLIILFLRLRLLVR | ESGECRCLLGLPLFIPPR | No | Junction | Junction | 18 | 1 | ATG | TGA | TransCirc | No |
chr13|28260446|28281379|+|10|circRNA|PAN3|ENST00000380958.7|8,9,10,11,12,13,14,15,16,17 | circPAN3(8,9,10,11,12,13,14,15,16,17) | PAN3 | MRGRSVSKLSYLSSNCTSRCLYATESKRTFLLHG | CLYATESKR | No | Alternative | Junction | 9 | 2 | ATG | TGA | riboCIRC,TransCirc | No |
chr13|28277236|28281379|+|3|circRNA|PAN3|ENST00000380958.7|15,16,17 | circPAN3(15,16,17) | PAN3 | MRGRTSRSDIIRKSCVGFGLQLFGRNSAREFTESHGTGDNQLFL | KSCVGFGLQLFGR | No | Alternative | Junction | 13 | 2 | ATG | TGA | NA | No |
chr13|28277236|28281379|+|3|circRNA|PAN3|ENST00000380958.7|15,16,17 | circPAN3(15,16,17) | PAN3 | MRGRTSRSDIIRKSCVGFGLQLFGRNSAREFTESHGTGDNQLFL | SCVGFGLQLFGR | No | Alternative | Junction | 12 | 2 | ATG | TGA | NA | No |
chr13|28277236|28281379|+|3|circRNA|PAN3|ENST00000380958.7|15,16,17 | circPAN3(15,16,17) | PAN3 | MRGRTSRSDIIRKSCVGFGLQLFGRNSAREFTESHGTGDNQLFL | TSRSDIIR | No | Junction | Junction | 8 | 2 | ATG | TGA | NA | No |
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