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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr13|20987880|20991404|-|2|circRNA|LATS2|ENST00000382592.4|4,3 | circLATS2(4,3) | LATS2 | LGNPWATECSAAPPSRARRRRRPGVTPACPRRAREDRQAPASLSHPLPPGSTCRTHTTSRPVPRPTSCMCWAPAARCSPATAPRRACSLPRGTASTWTCMNWAAPPSSSGRLPPWPAGTPCRSRAWRRRRARTWPSGLTAQCPAGPTPSTATSRGPVRLARPSPPCPPPTP | ARTWPSGLTAQCPAGPTPSTATSR | No | Alternative | Alternative | 24 | 1 | CTG | TGA | TransCirc | No |
chr13|20987880|20991404|-|2|circRNA|LATS2|ENST00000382592.4|4,3 | circLATS2(4,3) | LATS2 | LGNPWATECSAAPPSRARRRRRPGVTPACPRRAREDRQAPASLSHPLPPGSTCRTHTTSRPVPRPTSCMCWAPAARCSPATAPRRACSLPRGTASTWTCMNWAAPPSSSGRLPPWPAGTPCRSRAWRRRRARTWPSGLTAQCPAGPTPSTATSRGPVRLARPSPPCPPPTP | CSPATAPR | No | Alternative | Alternative | 8 | 1 | CTG | TGA | TransCirc | No |
chr13|21391721|21413772|-|5|circRNA|ZDHHC20|NM_153251|8,7,6,5,4 | circZDHHC20(8,7,6,5,4) | ZDHHC20 | LTDTRAKFHVLFLFFVSAMFFISVLSLFSYHCWLVGKNRTTIVLLVQF | TTIVLLVQF | No | Junction | Junction | 9 | 1 | CTG | TGA | TransCirc | No |
chr13|23869291|23886506|-|6|circRNA|MIPEP|ENST00000382172.3|7,6,5,4,3,2 | circMIPEP(7,6,5,4,3,2) | MIPEP | LKCLEELLSSRDLLAKLVGYSTFSHRALQGTIAKNPGSFWSS | ALQGTIAKNPGSFWSS | No | Junction | Junction | 16 | 1 | TTG | TGA | TransCirc | No |
chr13|24222818|24224582|+|1|circRNA|SPATA13|NM_001286792|4 | circSPATA13(4) | SPATA13 | LGTLPGEHDHCPKRPRARPRSPLCRLGPERRQDGDLPCVWKWSLWLQPWWRHGHPGSQTQPSQACAPLFHQSEEDGCPPRAAPLHGPGGELLHMEHPRLLPENGIL | LGTLPGEHDHCPK | No | Alternative | Alternative | 13 | 3 | CTG | TAA | riboCIRC,TransCirc | No |
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