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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr12|7403534|7432736|-|3|circRNA|CD163L1|ENST00000313599.7|6,5,4 | circCD163L1(6,5,4) | CD163L1 | LELLIALLYCAPFGWMTFYARGMSWHSGIADIVDGEIMTAVTMRMSH | LELLIALLYCAPFGWMTFYAR | No | Alternative | Alternative | 21 | 1 | CTG | TAA | NA | No |
chr12|7403534|7432736|-|3|circRNA|CD163L1|ENST00000313599.7|6,5,4 | circCD163L1(6,5,4) | CD163L1 | LELLIALLYCAPFGWMTFYARGMSWHSGIADIVDGEIMTAVTMRMSH | LELLIALLYCAPFGWMTFYARGMSWHSGIADIVDGEIMTAVTMR | No | Alternative | Alternative | 44 | 1 | CTG | TAA | NA | No |
chr12|7485095|7495401|-|6|circRNA|CD163|ENST00000359156.8|11,10,9,8,7,6 | circCD163(11,10,9,8,7,6) | CD163 | MELGALLARVACLKPLWVWCAGSWAVQTKGKSTLHL | MELGALLAR | No | Alternative | Alternative | 9 | 1 | ATG | TAG | TransCirc | No |
chr12|7496812|7502564|-|4|circRNA|CD163|ENST00000359156.8|5,4,3,2 | circCD163(5,4,3,2) | CD163 | MTAGTVTMLLWHASNWDVQLPSQPLVELTPVRDLDTSGLTAFLARDMNLLSGNVNTMNGESIIAITMKMLA | DLDTSGLTAFLARDMNLLSGNVNTMNGESIIAITMK | No | Alternative | Alternative | 36 | 1 | ATG | TGA | TransCirc | No |
chr12|76059797|76074239|-|5|circRNA|NAP1L1|ENST00000618691.4|6,5,4,3,2 | circNAP1L1(6,5,4,3,2) | NAP1L1 | LKLLMQFMNLRKKNVNGNQMKKMRFRYLEFLQHGRH | LKLLMQFMNLR | No | Alternative | Junction | 11 | 2 | TTG | TGA | TransCirc | No |
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