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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr12|6011616|6026046|-|12|circRNA|VWF|NM_000552|34,33,32,31,30,29,28,27,26,25,24,23 | circVWF(34,33,32,31,30,29,28,27,26,25,24,23) | VWF | LWLPLDLPLRKCVACVGILMASRTMTSPAATSKWRKTLWTLGTPGK | TMTSPAATSKWR | No | Alternative | Junction | 12 | 3 | CTG | TGA | TransCirc | No |
chr12|6110373|6121338|-|3|circRNA|VWF|NM_000552|5,4,3 | circVWF(5,4,3) | VWF | LRLGTTSCPVRPMALWPGSMAAATFKSCCQTDTSTRPAGCVATLTSLLKMTL | LGTTSCPVRPMALWPGSMAAATFK | No | Alternative | Alternative | 24 | 3 | CTG | TGA | TransCirc | No |
chr12|62470700|62532670|+|12|circRNA|MON2|NM_001278472|2,3,4,5,6,7,8,9,10,11,12,13 | circMON2(2,3,4,5,6,7,8,9,10,11,12,13) | MON2 | LKQNVKPPLKKVLHQHSRQNSRIYSQHQTKWIRKLVQMRGI | QNVKPPLKK | No | Alternative | Junction | 9 | 3 | TTG | TAA | TransCirc | No |
chr12|64481841|64486017|+|4|circRNA|TBK1|ENST00000331710.9|8,9,10,11 | circTBK1(8,9,10,11) | TBK1 | LQNCQYLTALSGINAKGDTMADGSSGSTYPCSCKHP | LQNCQYLTALSGINAK | No | Alternative | Junction | 16 | 3 | CTG | TGA | TransCirc | No |
chr12|65239928|65243469|+|4|circRNA|LEMD3|ENST00000308330.2|7,8,9,10 | circLEMD3(7,8,9,10) | LEMD3 | LTPCLKIRNMFDPVMCSDGLCRSALHEISMDKRRGGNKADV | SALHEISMDK | No | Alternative | Junction | 10 | 3 | TTG | TGA | TransCirc | No |
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