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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr8|140789473|140921132|-|13|circRNA|PTK2|ENST00000519419.5|14,13,12,11,10,9,8,7,6,5,4,3,2 | circPTK2(14,13,12,11,10,9,8,7,6,5,4,3,2) | PTK2 | LRGILQAAGKYYRRNTFQILLQALKKGAHRGTLVLLVDRSKYYHSEELGLCVQTPGLIFIGLGVCCWNWQAKRP | GILQAAGKYYR | No | Alternative | Alternative | 11 | 1 | CTG | TGA | NA | No |
chr8|140789473|140921132|-|13|circRNA|PTK2|ENST00000519419.5|14,13,12,11,10,9,8,7,6,5,4,3,2 | circPTK2(14,13,12,11,10,9,8,7,6,5,4,3,2) | PTK2 | LRGILQAAGKYYRRNTFQILLQALKKGAHRGTLVLLVDRSKYYHSEELGLCVQTPGLIFIGLGVCCWNWQAKRP | GTLVLLVDR | No | Alternative | Alternative | 9 | 1 | CTG | TGA | NA | No |
chr8|140818276|140846678|-|2|new|PTK2|ENST00000522684|78,51|0,28351 | NA | PTK2 | LDYFSGTGNRPRRRNQLPNGQGLQCEERLYVRDS | LDYFSGTGNRPRR | No | Alternative | Junction | 13 | 3 | CTG | TGA | riboCIRC,TransCirc | No |
chr8|140818276|140879637|-|7|circRNA|PTK2|ENST00000522684.5|10,9,8,7,6,5,4 | circPTK2(10,9,8,7,6,5,4) | PTK2 | LDYFSGTGNRPRRRNQLPNGQGLQWHHSEDSGQSQSKACGLLWIPPQSPAVRGGSLASRGYGRLQCEGEV | NQLPNGQGLQWHHSEDSGQSQSK | No | Junction | Junction | 23 | 3 | CTG | TGA | riboCIRC,TransCirc | No |
chr8|141150833|141168525|+|8|circRNA|DENND3|ENST00000262585.6|6,7,8,9,10,11,12,13 | circDENND3(6,7,8,9,10,11,12,13) | DENND3 | LNVTPKSPYTFKIPEIHFPLESKCVQAYHAHFVSMLSEAMCFLAPDNSLLLARYLYLRGLVYLMQGQLLNALLDFQNLYKTDIRIFPTDLVKRTVESMSAPEWEGAEQAPELMRLISEILDKPHEASKLDDHVKKFKLPKKHMQLGDFMKRVQESGIVKDASIIHRLFEALTVGI | LFEALTVGI | No | Junction | Junction | 9 | 3 | CTG | TAA | TransCirc | No |
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