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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr12|56216544|56221902|-|1|ciRNA|RNF41|ENST00000551711.5|1 | ciRNF41(1) | RNF41 | LTGQKGRKGAFRGPAWAGAVEPKPPPSKRHSLAPLPCLVVGSLVLSFLPRSSPPPSPP | GPAWAGAVEPKPPPSKR | No | Alternative | Alternative | 17 | 1 | TTG | TGA | NA | No |
chr12|56257384|56257827|-|1|ciRNA|ANKRD52|NM_173595|2 | ciANKRD52(2) | ANKRD52 | LDPSPPVGRLRVSSAQMRPQFFPSWSESLLCIWGWRAGQA | LDPSPPVGR | No | Alternative | Alternative | 9 | 1 | CTG | TGA | NA | No |
chr12|56274776|56282991|-|5|circRNA|CS|ENST00000549143.5|9,8,7,6,5 | circCS(9,8,7,6,5) | CS | LAKMCQMRSYETTSGTHSTQDGASVSEALVSLNARNCYPRLRVGKNPCLRAYFGCW | ASVSEALVSLNAR | No | Alternative | Junction | 13 | 2 | TTG | TAA | TransCirc | No |
chr12|56274776|56282991|-|5|circRNA|CS|ENST00000549143.5|9,8,7,6,5 | circCS(9,8,7,6,5) | CS | LAKMCQMRSYETTSGTHSTQDGASVSEALVSLNARNCYPRLRVGKNPCLRAYFGCW | ASVSEALVSLNARNCYPR | No | Alternative | Junction | 18 | 2 | TTG | TAA | TransCirc | No |
chr12|56282419|56282991|-|2|circRNA|CS|ENST00000549143.5|6,5 | circCS(6,5) | CS | MWSPCWTTFPPIYTPCLSSVQLLQPSTVKVTLPEHMHRVSAEPSTGRASVSEALVSLNARNCYPRLRVGKNPCLRAYFGCW | MWSPCWTTFPPIYTPCLSSVQLLQPSTVK | No | Alternative | Junction | 29 | 2 | ATG | TAA | TransCirc | No |
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