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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr12|53018797|53028188|+|6|circRNA|EIF4B|ENST00000262056.13|3,4,5,6,7,8 | circEIF4B(3,4,5,6,7,8) | EIF4B | LAVGIAGMMTTEEAGTAMKTDMTDGMIGRGAPEMITLGMIIGVMIEFRPLGTVTMTMCIGRLQLTVPSFPLLHGLLGNPISTGAVFPNRHPTLLF | GAPEMITLGMIIGVMIEFRPLGTVTMTMCIGR | No | Junction | Junction | 32 | 1 | TTG | TAG | TransCirc | No |
chr12|53381658|53383622|+|2|circRNA|SP1|ENST00000327443.8|2,3 | circSP1(2,3) | SP1 | LMGNSCSLLPLGPKCSRMVLVKYRSYQVQTNRLSQIEEVEATSLLLCQTYSSRLSPSKAWLIMYSQDRLSM | LMGNSCSLLPLGPKCSR | No | Alternative | Alternative | 17 | 2 | TTG | TGA | TransCirc | No |
chr12|53381658|53383622|+|2|circRNA|SP1|ENST00000327443.8|2,3 | circSP1(2,3) | SP1 | LSHPMRTATTPRARVSQGEQVSLTSQPHNFHRVPMAGRSSLPPLGLPLPQRNRVAAVPMAAMAVSLPRIAQSLVGSMLWLPLPTYRTSKF | VAAVPMAAMAVSLPR | No | Alternative | Alternative | 15 | 2 | TTG | TGA | TransCirc | No |
chr12|53454725|53459403|+|5|circRNA|RP11-793H13.8|ENST00000547717.1|4,5,6,7,8 | circRP11-793H13.8(4,5,6,7,8) | RP11-793H13.8 | LLVSVALSLEKVDARSRKYESFWLSPPTSDQRLDHSKSSSPEHCSTWTPV | KYESFWLSPPTSDQR | No | Junction | Junction | 15 | 2 | CTG | TGA | TransCirc | No |
chr12|53454725|53459403|+|5|circRNA|RP11-793H13.8|ENST00000547717.1|4,5,6,7,8 | circRP11-793H13.8(4,5,6,7,8) | RP11-793H13.8 | LLVSVALSLEKVDARSRKYESFWLSPPTSDQRLDHSKSSSPEHCSTWTPV | YESFWLSPPTSDQR | No | Junction | Junction | 14 | 2 | CTG | TGA | TransCirc | No |
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