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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr12|44520004|44532721|-|4|circRNA|NELL2|ENST00000395487.6|19,18,17,16 | circNELL2(19,18,17,16) | NELL2 | LIVGPCLAQMWSVNSAFSQRMSAARAVSQTLARLTPSAMTSPRLAWTK | LIVGPCLAQMWSVNSAFSQR | No | Alternative | Alternative | 20 | 2 | TTG | TGA | NA | No |
chr12|44665483|44777124|-|7|circRNA|NELL2|ENST00000395487.6|13,12,11,10,9,8,7 | circNELL2(13,12,11,10,9,8,7) | NELL2 | MSVLKGAITVVKIQCVSTPRVLLCASAKLDTSELMIIHVQPVQLAMTSMDLCRKSWSYRIF | LDTSELMIIHVQPVQLAMTSMDLCR | No | Junction | Junction | 25 | 1 | ATG | TAG | TransCirc | No |
chr12|44665483|44777124|-|7|circRNA|NELL2|ENST00000395487.6|13,12,11,10,9,8,7 | circNELL2(13,12,11,10,9,8,7) | NELL2 | MSVLKGAITVVKIQCVSTPRVLLCASAKLDTSELMIIHVQPVQLAMTSMDLCRKSWSYRIF | LDTSELMIIHVQPVQLAMTSMDLCRK | No | Junction | Junction | 26 | 1 | ATG | TAG | TransCirc | No |
chr12|45837497|45891918|+|8|circRNA|ARID2|ENST00000334344.10|10,11,12,13,14,15,16,17 | circARID2(10,11,12,13,14,15,16,17) | ARID2 | MQQLNMEEKMYIQGSVFGKVVSLFSDSGFLLLPTCRHGNFGKSLQSRR | MYIQGSVFGK | No | Alternative | Junction | 10 | 3 | ATG | TAA | TransCirc | No |
chr12|48063709|48098124|-|12|circRNA|SENP1|ENST00000552189.5|14,13,12,11,10,9,8,7,6,5,4,3 | circSENP1(14,13,12,11,10,9,8,7,6,5,4,3) | SENP1 | MEKEIKNVFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEMILLIG | KDIQTLNHLNWLNDEMILLIG | No | Junction | Junction | 21 | 1 | ATG | TGA | riboCIRC,TransCirc | No |
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