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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr12|19462509|19473355|+|2|circRNA|AEBP2|ENST00000538425.5|2,3 | circAEBP2(2,3) | AEBP2 | MDKEALLLQAKILPIIVVGTSARLASTLAQIWQITSVPYM | MDKEALLLQAK | No | Alternative | Alternative | 11 | 3 | ATG | TAG | NA | No |
chr12|20613442|20621411|+|3|circRNA|PDE3A|NM_000921|3,4,5 | circPDE3A(3,4,5) | PDE3A | MMTLTKSRSFTSSYAISAANHVKAKKQSRPVFRNQYYCGHRRHGRGPRPHYRPPGRPFSSTKRVHILESREQLAQHTAHLPGHSQAQSESRHFAQ | KQSRPVFR | No | Junction | Junction | 8 | 2 | ATG | TGA | TransCirc | No |
chr12|20621295|20654205|+|11|circRNA|PDE3A|NM_000921|5,6,7,8,9,10,11,12,13,14,15 | circPDE3A(5,6,7,8,9,10,11,12,13,14,15) | PDE3A | LENGWKTAMSQEILMTQKKRRKKHQHQMKRKPVKIMNLQS | TAMSQEILMTQK | No | Alternative | Junction | 12 | 2 | CTG | TGA | TransCirc | No |
chr12|2115223|2120430|+|2|circRNA|CACNA1C|NM_000719|2,3 | circCACNA1C(2,3) | CACNA1C | LAMRPSPQSAPRSGSGSNMGNPRSRAAPRPHARPEPCSA | LAMRPSPQSAPRSGSGSNMGNPR | No | Alternative | Alternative | 23 | 2 | CTG | TGA | TransCirc | No |
chr12|21859585|21861055|-|2|circRNA|ABCC9|NM_020297|20,19 | circABCC9(20,19) | ABCC9 | LSGGQRQRICVARALYQNTNIVFLVQSCHRCLFSSARY | CLFSSAR | No | Alternative | Junction | 7 | 1 | CTG | TGA | TransCirc | No |
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