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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr12|132851617|132853573|-|2|circRNA|CHFR|ENST00000266880.11|12,11 | circCHFR(12,11) | CHFR | LQGSHALCTCCFQPMPDRRAEREQDPRVAPQQSSHTSCAGSVLSTEGRRRSLPTAQHPRASQEPHRPWGMHPPRPSA | RSLPTAQHPR | No | Alternative | Junction | 10 | 3 | CTG | TGA | NA | No |
chr12|132851617|132853573|-|2|circRNA|CHFR|ENST00000266880.11|12,11 | circCHFR(12,11) | CHFR | LQGSHALCTCCFQPMPDRRAEREQDPRVAPQQSSHTSCAGSVLSTEGRRRSLPTAQHPRASQEPHRPWGMHPPRPSA | SLPTAQHPRASQEPHRPWGMHPPRPSA | No | Alternative | Junction | 27 | 3 | CTG | TGA | NA | No |
chr12|132851617|132853573|-|2|circRNA|CHFR|ENST00000266880.11|12,11 | circCHFR(12,11) | CHFR | LQGSHALCTCCFQPMPDRRAEREQDPRVAPQQSSHTSCAGSVLSTEGRRRSLPTAQHPRASQEPHRPWGMHPPRPSA | VAPQQSSHTSCAGSVLSTEGRR | No | Junction | Junction | 22 | 3 | CTG | TGA | NA | No |
chr12|132853430|132861634|-|5|circRNA|CHFR|ENST00000266880.11|11,10,9,8,7 | circCHFR(11,10,9,8,7) | CHFR | LPSTRGRARSPTGPGGCTLHVRQPDDRVWGWWHLP | SPTGPGGCTLHVR | No | Alternative | Junction | 13 | 1 | CTG | TAA | NA | No |
chr12|133182030|133187871|+|1|ciRNA|CTD-2140B24.4|ENST00000540096.2|6 | ciCTD-2140B24.4(6) | CTD-2140B24.4 | LQIRCGQSSSGRMCTLRRELRTVVREMTRESRGRGVED | TVVREMTR | No | Alternative | Alternative | 8 | 3 | TTG | TGA | NA | No |
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