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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr12|132069641|132076477|+|1|ciRNA|EP400|ENST00000389561.6|51 | ciEP400(51) | EP400 | LGARHDGADRTHRWPRASYYVKTAGDACSSKCTESGHWVESVAL | LGARHDGADR | No | Alternative | Alternative | 10 | 1 | CTG | TAA | NA | No |
chr12|132069641|132076477|+|1|ciRNA|EP400|ENST00000389561.6|51 | ciEP400(51) | EP400 | LGARHDGADRTHRWPRASYYVKTAGDACSSKCTESGHWVESVAL | WPRASYYVK | No | Alternative | Alternative | 9 | 1 | CTG | TAA | NA | No |
chr12|132069641|132076477|+|1|ciRNA|EP400|ENST00000389561.6|51 | ciEP400(51) | EP400 | LKCAASAGTPRSLGQRWSFASAGTFRCHRNTAWCVAQAFTQLSGVTHLASESVSPPLSSPALRLRAGAFLTDATGGRGCFLCSLWVPLWVQCLPPGWQLAVARGSFASSPPRTGLYLVSGQLCPVRPWRSRGASPCGQRSRAEVVQLFCSVTRDARLCLGLETGSS | LKCAASAGTPR | No | Alternative | Alternative | 11 | 2 | CTG | TGA | NA | No |
chr12|132069641|132076477|+|1|ciRNA|EP400|ENST00000389561.6|51 | ciEP400(51) | EP400 | LLVLYLRRLRIFSAVPSKSWTIVVLRWALEHRLHLCFPAVPQGALRALILVNFIYNCLSDSKLVNAF | SWTIVVLR | No | Alternative | Alternative | 8 | 1 | TTG | TGA | NA | No |
chr12|132664003|132681279|-|22|circRNA|POLE|ENST00000320574.9|23,22,21,20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2 | circPOLE(23,22,21,20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2) | POLE | MVRPAQQLPRKFCLQDDQCEEAQSDHLLPRRHVEHHGQGMMAPLPQFRHSSAWNGVSGRIRWICGLVLSG | MVRPAQQLPR | No | Alternative | Junction | 10 | 1 | ATG | TGA | NA | No |
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