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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr12|131960584|131961954|+|1|circRNA|EP400|ENST00000389561.6|2 | circEP400(2) | EP400 | LCFRMGQGSPRSPREPRFSSSTRVRPSQSESGDPPSPTHSQGAPSTTWDPRALQPRVGPACSPWPAQATSPRLTCHRRSAASSRASWFSSSRCCRGRRCPGPWASRGHPACCSPGLGAQRGLG | GHPACCSPGLGAQR | No | Alternative | Alternative | 14 | 1 | TTG | TGA | TransCirc | No |
chr12|131960584|131961954|+|1|circRNA|EP400|ENST00000389561.6|2 | circEP400(2) | EP400 | LCFRMGQGSPRSPREPRFSSSTRVRPSQSESGDPPSPTHSQGAPSTTWDPRALQPRVGPACSPWPAQATSPRLTCHRRSAASSRASWFSSSRCCRGRRCPGPWASRGHPACCSPGLGAQRGLG | GHPACCSPGLGAQRGLG | No | Alternative | Alternative | 17 | 1 | TTG | TGA | TransCirc | No |
chr12|131960584|131961954|+|1|circRNA|EP400|ENST00000389561.6|2 | circEP400(2) | EP400 | LCFRMGQGSPRSPREPRFSSSTRVRPSQSESGDPPSPTHSQGAPSTTWDPRALQPRVGPACSPWPAQATSPRLTCHRRSAASSRASWFSSSRCCRGRRCPGPWASRGHPACCSPGLGAQRGLG | MGQGSPR | No | Alternative | Alternative | 7 | 1 | TTG | TGA | TransCirc | No |
chr12|131960584|131961954|+|1|circRNA|EP400|ENST00000389561.6|2 | circEP400(2) | EP400 | LCFRMGQGSPRSPREPRFSSSTRVRPSQSESGDPPSPTHSQGAPSTTWDPRALQPRVGPACSPWPAQATSPRLTCHRRSAASSRASWFSSSRCCRGRRCPGPWASRGHPACCSPGLGAQRGLG | RCPGPWASR | No | Alternative | Alternative | 9 | 1 | TTG | TGA | TransCirc | No |
chr12|131960584|131961954|+|1|circRNA|EP400|ENST00000389561.6|2 | circEP400(2) | EP400 | MALAPRTSSISCRGPGPALAARVRSSRPTPTHPRPPQLPSLPQQARRHPSLPVIKYSS | GPGPALAAR | No | Alternative | Alternative | 9 | 1 | ATG | TGA | TransCirc | No |
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