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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr12|117761010|117761524|-|1|circRNA|KSR2|ENST00000425217.5|4 | circKSR2(4) | KSR2 | LDHPVAHDRDGEGEQSRVPPGAHPVDPHPSLPEPQGPVQVRPALLSHQPHSRGPCVHPRGQAYRGRLPGLVPAPATGVGPPFPAPIAPAAARGPHPAAHPQHRHHRDPAGHAAHEEEEQAEAPGDPTALLPKTDTLDPGIHRAASEQIPRVPAGAPRGRGPHAQEATFPNKTGPSSGPRQRRGRRTIPCAPRSPPRGSAPISPRAPGSRPSASSTIVTPAPLPGPLCTPTWTGLPWTPTRACARPRHWSRATVPCPHRPGSGTRSAPRRAPPTSSPP | GQAYRGR | No | Alternative | Junction | 7 | 2 | CTG | TGA | TransCirc | No |
chr12|117761010|117761524|-|1|circRNA|KSR2|ENST00000425217.5|4 | circKSR2(4) | KSR2 | LDHPVAHDRDGEGEQSRVPPGAHPVDPHPSLPEPQGPVQVRPALLSHQPHSRGPCVHPRGQAYRGRLPGLVPAPATGVGPPFPAPIAPAAARGPHPAAHPQHRHHRDPAGHAAHEEEEQAEAPGDPTALLPKTDTLDPGIHRAASEQIPRVPAGAPRGRGPHAQEATFPNKTGPSSGPRQRRGRRTIPCAPRSPPRGSAPISPRAPGSRPSASSTIVTPAPLPGPLCTPTWTGLPWTPTRACARPRHWSRATVPCPHRPGSGTRSAPRRAPPTSSPP | RTIPCAPR | No | Alternative | Junction | 8 | 2 | CTG | TGA | TransCirc | No |
chr12|117761010|117761524|-|1|circRNA|KSR2|ENST00000425217.5|4 | circKSR2(4) | KSR2 | LDHPVAHDRDGEGEQSRVPPGAHPVDPHPSLPEPQGPVQVRPALLSHQPHSRGPCVHPRGQAYRGRLPGLVPAPATGVGPPFPAPIAPAAARGPHPAAHPQHRHHRDPAGHAAHEEEEQAEAPGDPTALLPKTDTLDPGIHRAASEQIPRVPAGAPRGRGPHAQEATFPNKTGPSSGPRQRRGRRTIPCAPRSPPRGSAPISPRAPGSRPSASSTIVTPAPLPGPLCTPTWTGLPWTPTRACARPRHWSRATVPCPHRPGSGTRSAPRRAPPTSSPP | TDTLDPGIHRAASEQIPR | No | Alternative | Junction | 18 | 2 | CTG | TGA | TransCirc | No |
chr12|118255447|118266759|-|2|circRNA|TAOK3|ENST00000419821.6|3,2 | circTAOK3(3,2) | TAOK3 | LAIMRKGVLKDPEIADLFYKDDPEELFIGLHEIGHGSFGAVYFVAS | DDPEELFIGLHEIGHGSFGAVYFVAS | No | Junction | Junction | 26 | 2 | CTG | TAA | TransCirc | No |
chr12|118389946|118391097|+|1|ciRNA|SUDS3|ENST00000543473.1|5 | ciSUDS3(5) | SUDS3 | LKVHSSEVLTSLAHHRPLCQSPQWRDLKSGGIYNFCLSIISIYVYFGVQALTKCCSILLSCCIKNNSNFLNIHNLSRIYFPLKL | LKVHSSEVLTSLAHHRPLCQSPQWR | No | Alternative | Alternative | 25 | 2 | CTG | TAA | NA | No |
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