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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr12|112246900|112252528|-|7|circRNA|HECTD4|ENST00000377560.9|29,28,27,26,25,24,23 | circHECTD4(29,28,27,26,25,24,23) | HECTD4 | LAKTKTLVKSLMNRAELLLHVTIAAQSGLTRSISGTPAETPGGRRYSHLLL | RYSHLLL | No | Alternative | Junction | 7 | 2 | CTG | TGA | TransCirc | No |
chr12|112246900|112252528|-|7|circRNA|HECTD4|ENST00000377560.9|29,28,27,26,25,24,23 | circHECTD4(29,28,27,26,25,24,23) | HECTD4 | LAKTKTLVKSLMNRAELLLHVTIAAQSGLTRSISGTPAETPGGRRYSHLLL | SISGTPAETPGGR | No | Junction | Junction | 13 | 2 | CTG | TGA | TransCirc | No |
chr12|112246900|112252528|-|7|circRNA|HECTD4|ENST00000377560.9|29,28,27,26,25,24,23 | circHECTD4(29,28,27,26,25,24,23) | HECTD4 | LAKTKTLVKSLMNRAELLLHVTIAAQSGLTRSISGTPAETPGGRRYSHLLL | SISGTPAETPGGRR | No | Junction | Junction | 14 | 2 | CTG | TGA | TransCirc | No |
chr12|112279227|112319742|-|8|circRNA|HECTD4|ENST00000550722.5|9,8,7,6,5,4,3,2 | circHECTD4(9,8,7,6,5,4,3,2) | HECTD4 | LPLKMLRKTPIYTCGTYLVMLVPPPGGSGSSATRSLFGGTSGLSSLKNFNL | SLFGGTSGLSSLKNFNL | No | Junction | Junction | 17 | 3 | CTG | TGA | NA | No |
chr12|112319224|112319742|-|1|circRNA|HECTD4|ENST00000550722.5|2 | circHECTD4(2) | HECTD4 | LRSVCGNQSNAYARLLEYRLNALRGLWNAQRQLALEEQHERESSGDEETLALLKRQGLLQQPEQAPFTSRMGLLLVFPLIQSQSRTDPSLCNITAEVLLNCLRDCQPLSLTKEPADCLNGIETLLCSWLEETSDTGRHIPHKQKENAAAALVALACARF | ENAAAALVALACARF | No | Junction | Junction | 15 | 1 | TTG | TAA | TransCirc | No |
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