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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr12|112140818|112142295|+|2|circRNA|TRAFD1|ENST00000412615.6|5,6 | circTRAFD1(5,6) | TRAFD1 | LKFVGERGRKREMRLPYLLMHMMNLGVRMESGLHPNSSDKLRLWTHP | LKFVGER | No | Alternative | Alternative | 7 | 2 | CTG | TGA | TransCirc | No |
chr12|112172670|112179397|-|5|circRNA|HECTD4|ENST00000550722.5|67,66,65,64,63 | circHECTD4(67,66,65,64,63) | HECTD4 | MHRCPTCTEGLKKVDPGDGRGTCAVHQPAMPPPRHHTRTAPSP | GTCAVHQPAMPPPR | No | Alternative | Alternative | 14 | 1 | ATG | TGA | TransCirc | No |
chr12|112172670|112179397|-|5|circRNA|HECTD4|ENST00000550722.5|67,66,65,64,63 | circHECTD4(67,66,65,64,63) | HECTD4 | MHRCPTCTEGLKKVDPGDGRGTCAVHQPAMPPPRHHTRTAPSP | KVDPGDGR | No | Alternative | Alternative | 8 | 1 | ATG | TGA | TransCirc | No |
chr12|112178930|112179397|-|2|circRNA|HECTD4|ENST00000550722.5|64,63 | circHECTD4(64,63) | HECTD4 | LRKYGVPKPKFDKSKYSKAGKEQHPVKVVSTKRPITKPPAKDKAVLNSVRGEAGARSQRGSDGDI | DKAVLNSVR | No | Alternative | Junction | 9 | 1 | CTG | TAA | TransCirc | No |
chr12|112178930|112185493|-|4|circRNA|HECTD4|ENST00000550722.5|64,63,62,61 | circHECTD4(64,63,62,61) | HECTD4 | LRKYGVPKPKFDKSKYSKAGKEQHPVKVVSTKRPITKPPAKDKAVLNSVRKLLVDHGHGSLREGACFPSPGRAPAHGAHPGAEAAPRWPVLLNRPPAEPLPGHADGLAVGAPQAVRRGDAELGLRRRLRGLRGGGGR | APAHGAHPGAEAAPR | No | Alternative | Junction | 15 | 1 | CTG | TGA | TransCirc | No |
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