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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr12|106363869|106369683|+|5|circRNA|POLR3B|ENST00000228347.8|2,3,4,5,6 | circPOLR3B(2,3,4,5,6) | POLR3B | LRDMTYSAPITVDIEYTRGSQRIIRNALPIGRKNGGCFQHF | NALPIGRK | No | Alternative | Junction | 8 | 1 | TTG | TAA | TransCirc | No |
chr12|107742220|107760771|-|8|circRNA|PRDM4|NM_012406|9,8,7,6,5,4,3,2 | circPRDM4(9,8,7,6,5,4,3,2) | PRDM4 | LGSPLPEASGRKAPGVPRDAPTRGGVHGHRPSGEVGRPRATPGTSGRVGAAVVSKMW | KAPGVPR | No | Alternative | Alternative | 7 | 1 | TTG | TAG | NA | No |
chr12|107742220|107760771|-|8|circRNA|PRDM4|NM_012406|9,8,7,6,5,4,3,2 | circPRDM4(9,8,7,6,5,4,3,2) | PRDM4 | LVAYPHDGKIFFCTSQDIPPENELLFYYSRDYAQQIGWAAPFPKLLDGRPQVFPEMPQPVAGCTATGPREKLGGPGRPRGRVAASVQRL | VAASVQR | No | Alternative | Junction | 7 | 2 | TTG | TGA | NA | No |
chr12|107751414|107756965|-|3|circRNA|PRDM4|NM_012406|5,4,3 | circPRDM4(5,4,3) | PRDM4 | MVPKVFIPVMAMRWPWTQQSLWRTFLGLPAQFRQMEWQRSLRWTVLQASIPKSQMAPEVMNLCLWIL | MVPKVFIPVMAMR | No | Alternative | Alternative | 13 | 1 | ATG | TGA | TransCirc | No |
chr12|108526098|108526553|-|1|circRNA|SART3|NM_014706|16 | circSART3(16) | SART3 | LFPPVWIRAKTPILRAAFQTQKGREQHPCSWRNTKCRSSSRARWEMCCRRCGAPFEAEGEGSLPEEGHAQGAARQQQGQHHRLCQQPALQHAGAGHEAQATLRGLWGGGPDPTHLQQPWGFPRLLLRGV | CGAPFEAEGEGSLPEEGHAQGAAR | No | Alternative | Junction | 24 | 1 | TTG | TAA | TransCirc | No |
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